1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaatattgtgggatctcaattactgaaggagaatttacacgtgaatttttttcatcttttgttttcttaatgagttgccagATCTTATTGTCCGGTCTCATGAAGTAAAGGATGAAGGCCATGAAATTGAACATGATGGAAAGCTTATAACAGTCTTCTCTGCGCCTAATTACTGTGACCA
species | Zea mays |
transcript | GRMZM2G126435_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCCTTTGGCGCAGATGTGACTAAGAAGTTTTTACAGGAAAATAACCTGG ATCTTATTGTCCGGTCTCATGAAGTANAGGATGAAGGCCATGAAATTGAACEST: gi|211035489|gb|FK976708.1|FK976708
genomic: TTCCTTTGGCGCAGATGTGACTAAGAAGTTTTTACAGGAAAATAACCTGGgtaaatattg ... gagttgccagATCTTATTGTCCGGTCTCATGAAGTAAAGGATGAAGGCCATGAAATTGAAC
EST: TTCCTTTGGCGCAGATGTGACTAAGAAGTTTTTACAGGAAAATAACCTGG ATCTTATTGTCCGGTCTCATGAAGTAAAGGATGAAGGCCATGAAATTGAACEST: gi|4688476|gb|AI637146.1|AI637146
genomic: TTCCTTTGGCGCAGATGTGACTAAGAAGTTTTTACAGGAAAATAACCTGGgtaaatattg ... gagttgccagATCTTATTGTCCGGTCTCATGAAGTAAAGGATGAAGGCCATGAAATTGAAC
EST: TTCCTTTGGCGCAGATGTGACTAAGAAGTTTTTACAGGAAAATAACCTGG ATCTTATTGTCCGGTCTCATGAAGTAAAGGATGAAGGCCATGAAATTGAAC
genomic: TTCCTTTGGCGCAGATGTGACTAAGAAGTTTTTACAGGAAAATAACCTGGgtaaatattg ... gagttgccagATCTTATTGTCCGGTCTCATGAAGTAAAGGATGAAGGCCATGAAATTGAAC
aggagaatttacacgtgaatttttttcatcttttgttttcttaatgagttgccagATCTTATTGTCCGGTCTCATGAAGTAAAGGATGAAGGCCATGAAATTGAACATGATGGAAAGCTTATAACAGTCTTCTCTGCGCCTAATTACTGTGACCA
tcttaat putative branch site (score: 3)
aatttttttcatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatattgtgggatctcaattactgaaggagaatttacacgtgaatttttttcatcttttgttttcttaatgagttgccagATCTTATTGTCCGGTCTCATGAAGTAAAGGATGAAGGCCATGAAATTGAACATGATGGAAAGCTTATAACAGTCTTCTCTGCGCCTAATTACTGTGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA