Data associated with selected splice site

gtatgccttaatctttctaaagggaaaacatacattcccacttgttctcaactcctcgttgtgtttcatactgatttgtttgctttacattgtgcagTCTGTCAATGAGAATTTCCGCATTACAAGTGATGATAAG

RNA-Seq data

 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 33

Block sizes: 43 (upstream exon), 47 (downstream exon)
Score: 21

Block sizes: 47 (upstream exon), 47 (downstream exon)
Score: 15

Block sizes: 46 (upstream exon), 43 (downstream exon)
Score: 43

tgttctcaactcctcgttgtgtttcatactgatttgtttgctttacattgtgcagTCTGTCAATGAGAATTTCCGCATTACAAGTGATGATAAG

                          tactgat  putative branch site (score: 43)
                               atttgttt  TA-rich tract