1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agacacaggcagtgtgaagtagtgcaggcttatgcttttggtatgtttgcttagcaccttcaggctattaatctgtgctgtggtatcggatgcttgccagTTCATCGACTCAGGTGCAGGGGTGGCTCCAACCATGCTGGGGCGGAGATGCTTCGCATATGTGGTGGCTGGCAACCCACAGGAAGGCCTTGAGGATGCAA
species | Zea mays |
transcript | GRMZM2G121826_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACGCCTTTAGGTCTAAGGATTACTCGACCGCAATTGAGTGTTACTCAAGG TTCATCGACTCAGGTGCAGGGGTGGCTCCAACCATGCTGGGGCGGAGATGCEST: gi|32866508|gb|CF006190.1|CF006190
genomic: ACGCCTTTAGGTCTAAGGATTACTCGACTGCAATTGAGTGTTACTCAAGGgtatgcttat ... tgcttgccagTTCATCGACTCAGGTGCAGGGGTGGCTCCAACCATGCTGGGGCGGAGATGC
EST: ACGCCTTTAGGTCTAAGGATTACTCGACCGCAATTGAGTGTTACTCAAGG TTCATCGACTCAGGTGCAGGGGTGGCTCCAACCATGCTGGGGCGGAGATGCEST: gi|50338611|gb|CO533737.1|CO533737
genomic: ACGCCTTTAGGTCTAAGGATTACTCGACTGCAATTGAGTGTTACTCAAGGgtatgcttat ... tgcttgccagTTCATCGACTCAGGTGCAGGGGTGGCTCCAACCATGCTGGGGCGGAGATGC
EST: ACGCCTTTAGGTCTAAGGATTACTCGACTGCAATTGAGTGTTACTCAAGG TTCATCGACTCAGGTGCAGGGGTGGCTCCAACCATGCTGGGGCGGAGATGCEST: gi|110524126|gb|EE028310.1|EE028310
genomic: ACGCCTTTAGGTCTAAGGATTACTCGACTGCAATTGAGTGTTACTCAAGGgtatgcttat ... tgcttgccagTTCATCGACTCAGGTGCAGGGGTGGCTCCAACCATGCTGGGGCGGAGATGC
EST: ACGCCTTTAGGTCTAAGGATTACTCGACTGCAATTGAGTGTTACTCAAGG TTCATCGACTCAGGTGCAGGGGTGGCTCCAACCATGCTGGGGCGGAGATGCEST: gi|71299875|gb|DR785963.1|DR785963
genomic: ACGCCTTTAGGTCTAAGGATTACTCGACTGCAATTGAGTGTTACTCAAGGgtatgcttat ... tgcttgccagTTCATCGACTCAGGTGCAGGGGTGGCTCCAACCATGCTGGGGCGGAGATGC
EST: ACGCCTTTAGGTCTAAGGATTACTCGACTGCAATTGAGTGTTACTCAAGG TTCATCGACTCAGGTGCAGGGGTGGCTCCAACCATGCTGGGGCGGAGATGC
genomic: ACGCCTTTAGGTCTAAGGATTACTCGACTGCAATTGAGTGTTACTCAAGGgtatgcttat ... tgcttgccagTTCATCGACTCAGGTGCAGGGGTGGCTCCAACCATGCTGGGGCGGAGATGC
tttgcttagcaccttcaggctattaatctgtgctgtggtatcggatgcttgccagTTCATCGACTCAGGTGCAGGGGTGGCTCCAACCATGCTGGGGCGGAGATGCTTCGCATATGTGGTGGCTGGCAACCCACAGGAAGGCCTTGAGGATGCAA
tattaat putative branch site (score: 2)
tattaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agacacaggcagtgtgaagtagtgcaggcttatgcttttggtatgtttgcttagcaccttcaggctattaatctgtgctgtggtatcggatgcttgccagTTCATCGACTCAGGTGCAGGGGTGGCTCCAACCATGCTGGGGCGGAGATGCTTCGCATATGTGGTGGCTGGCAACCCACAGGAAGGCCTTGAGGATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG