1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtcagttaatctgccatgcttttgatactattttttcttgtagtcatgttctgatcaatggtgttgcttgcacatagGTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTGGAGCATCAGCGGAGGACAGACCCTGCAACAAATGAACCACTCTTCACAA
species | Zea mays |
transcript | GRMZM2G118467_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCACCAGCTTCCTTTG GTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTAEST: gi|211192150|gb|FK946799.1|FK946799
genomic: CCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCACCAGCTTCCTTTGgtcagttaat ... ttgcacatagGTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTG
EST: CCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCACCAGCTTCCTTTG GTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGEST: gi|149111795|gb|EE190948.2|EE190948
genomic: CCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCACCAGCTTCCTTTGgtcagttaat ... ttgcacatagGTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTG
EST: CAGCTTCCTTTG GTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTGEST: gi|60343893|gb|DN210866.1|DN210866
genomic: CAGCTTCCTTTGgtcagttaat ... ttgcacatagGTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTG
EST: CCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCACCAGCTTCCTTTG GTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTGEST: gi|32824898|gb|CD964620.1|CD964620
genomic: CCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCACCAGCTTCCTTTGgtcagttaat ... ttgcacatagGTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTG
EST: CCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCACCAGCTTCCTTTG GTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTGEST: gi|148934305|gb|EC878331.2|EC878331
genomic: CCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCACCAGCTTCCTTTGgtcagttaat ... ttgcacatagGTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTG
EST: CCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCACCAGCTTCCTTTG GTCAGTGCATACTTTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTGEST: gi|32793111|gb|CD945347.1|CD945347
genomic: CCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCACCAGCTTCCTTTGgtcagttaat ... ttgcacatagGTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTG
EST: CCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCACCAGCTTCCTTTG GTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTG
genomic: CCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCACCAGCTTCCTTTGgtcagttaat ... ttgcacatagGTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTG
tgatactattttttcttgtagtcatgttctgatcaatggtgttgcttgcacatagGTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTGGAGCATCAGCGGAGGACAGACCCTGCAACAAATGAACCACTCTTCACAA
ttctgat putative branch site (score: 3)
tattttttcttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttaatctgccatgcttttgatactattttttcttgtagtcatgttctgatcaatggtgttgcttgcacatagGTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTGGAGCATCAGCGGAGGACAGACCCTGCAACAAATGAACCACTCTTCACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA