1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaatttaattcttgaattaattgtactttgtactaagttgttgagaacatgacatagttcagtgatatacatattccttctgtagGTTGCTGGAGACTTTGATGCCACAAGGAAATTCATCGATTCTGTTAAGATACCCTATCATGCCCCTTCTTTCGGAGGCTGTGAGAGCATAATTGATCAGC
species | Zea mays |
transcript | GRMZM2G113873_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACATTGCCAAGAGTCAAATGACTGGCTTTGGTGGTGTGGTTAGTTTTGAG GTTGCTGGAGACTTTGATGCCACAEST: gi|78086437|gb|DV514830.1|DV514830
genomic: ACATTGCCAAGAGTCAAATGACTGGCTTTGGTGGTGTGGTTAGTTTTGAGgtaaatttaa ... ccttctgtagGTTGCTGGAGACTTTGATGCCACA
EST: CATTTGCCA-GAGTCAAATGACTGGCTTTGGTGGTGTGGTTAGTTTTGAG GTTGCTGGAGACTTTGATGCEST: gi|60395589|gb|DN228459.1|DN228459
genomic: CATT-GCCAAGAGTCAAATGACTGGCTTTGGTGGTGTGGTTAGTTTTGAGgtaaatttaa ... ccttctgtagGTTGCTGGAGACTTTGATGC
EST: ACATTGCCAAGAGTCAAATGACTGGCTTTGGTGGTGTGGTTAGTTTTGAG GTTGCTGGAGACTTTGATGCCACAAGGAAATTCATCGATTCTGTTAAGATA
genomic: ACATTGCCAAGAGTCAAATGACTGGCTTTGGTGGTGTGGTTAGTTTTGAGgtaaatttaa ... ccttctgtagGTTGCTGGAGACTTTGATGCCACAAGGAAATTCATCGATTCTGTTAAGATA
tactaagttgttgagaacatgacatagttcagtgatatacatattccttctgtagGTTGCTGGAGACTTTGATGCCACAAGGAAATTCATCGATTCTGTTAAGATACCCTATCATGCCCCTTCTTTCGGAGGCTGTGAGAGCATAATTGATCAGC
tattccttct CT-rich tract
atatacatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttaattcttgaattaattgtactttgtactaagttgttgagaacatgacatagttcagtgatatacatattccttctgtagGTTGCTGGAGACTTTGATGCCACAAGGAAATTCATCGATTCTGTTAAGATACCCTATCATGCCCCTTCTTTCGGAGGCTGTGAGAGCATAATTGATCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA