Sequence
atgc intronic sequence ATGC exonic sequence...tatgttacagctgatgcataatacagtttttttcctgcttgacatgtacatagaggcaattttatgcttggccacattgtttataaatttgttcttgcagACTGAGATGACTACTGCTGAGAGGGAACTTGATGCTAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGAAAAGACGCTGAGCTTCTGTTTGGAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G107696_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g08200.1 (Oryza sativa), 3'ss of exon 5
---tatgttacagctgatgcataatacagtttttttcctgcttgacatgtacatagaggcaattttatgcttggccacattgtttataaatttgttcttgcagACTGAGATGACTACTGCTGAGAGGGAACTTGATGCTAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGAAAAGACGCTGAGCTTCTGTTTGGAC
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tattctgtagcatctcatgt-tcatactgtgttttccc--ctttatatgcttgtctatctgtctagtttagaggctatttgatgtgacccttttgttgtgcagACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGAACTTTTATACGGCC
upper sequence: GRMZM2G107696_T02 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA12G22240.1 (Glycine max), 3'ss of exon 5
---------------------------------------------------------------------------------tatgttacagctg-atgcataatacagtttttttcctgct-tgacatgtacatagaggcaattttatgcttggccacattgttta--taaatttgttct-tgcagACTGAGATGACTACTGCTGAGAGGGAACTTGATGCTAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGAAAAGACGCTGAGCTTCTGTTTGGAC
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gttaattatttatcttgaaatgatacttttcacgcacaataaaaaatatattaattattaatcttgagtataaacttttgtcttgttactccaacaggcatggcgtaagagtgtacttaaaattaattaaatttaaatatcacttgactcttaatattttaaactggtccaatttcttatattcagACTGAAATGACAACTGCTGAAAGAGAACTTGATCAAAATACGAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGAC
upper sequence: GRMZM2G107696_T02 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA06G39770.1 (Glycine max), 3'ss of exon 5
----------------------------------------------------------------------------------tatgttacagctg-atgcataatacagtttttttcctgct-tgacatgtacatagaggcaattttatgcttggccacattgttta--taaatttgttct-tgcagACTGAGATGACTACTGCTGAGAGGGAACTTGATGCTAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGAAAAGACGCTGAGCTTCTGTTTGGAC
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gttaattatttatcttgaaatgatacttttcacacacacaatcaaactatattaattatttgtcttgagaataaacttttgtcttgttactccaacaggcatggcataagagcgtacttgcaattaattaaatttaaatatcacttgactcttaatattttaaaatggtccactttcttatattcagACTGAAATGACAACTGCTGAAAGAGAACTTGATCACAATACAAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGAC
upper sequence: GRMZM2G107696_T02 (Zea mays), 3'ss of exon 9
lower sequence: AT3G20630.1 (Arabidopsis thaliana), 3'ss of exon 5
-------tatgttacagctgatgcataatacagtttttt--tcctgcttgacatgtacatagaggcaattttatgcttggccacattgtttataaatttgttcttgcagACTGAGATGACTACTGCTGAGAGGGAACTTGATGCTAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGAAAAGACGCTGAGCTTCTGTTTGGAC
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tttgtactgccttgatcatcatctttgctaaagatatcccatgctggttttaatctgaataatgttaacttt---cttga----aatgtttgcta--caattttcacagACTGAAATGACAACTGCTGAAAGAGAACTTGATCAAAATACAAATTTTGATTGGAACCGTATACAAGAGAGTGGAAAAGAATTGGTGCCAGTTTTTGGAC
upper sequence: GRMZM2G107696_T02 (Zea mays), 3'ss of exon 9
lower sequence: Vv19s0014g03920.t01 (Vitis vinifera), 3'ss of exon 5
tatgttacagctgatgcataatacagtttttttcctgcttgacatg---tacatagaggcaattttatgcttggccacattgtttataaatttgttcttgcagACTGAGATGACTACTGCTGAGAGGGAACTTGATGCTAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGAAAAGACGCTGAGCTTCTGTTTGGAC
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ttttttttttttgataaatgatagttgttgcttgagaatcaacattgtttacttacatttcattaaac-cttaagctcaatatacattttcttgtt--tccagACTGAAATGACTACTGCTGAAAGGGAACTTGACCAGAATACCAATTTTGATTGGAACCGAATTCAAGAAAGTGGACAAGAAGTTGAACCACTATTTGGACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116815278|gb|EC858437.1|EC858437EST: TAGCTCAGCACTTATCACATTTTGGTATCGATTTTTCTTCACTCCAAAAG ACTGAGATGACTACTGCTGAGAGGGAACTTGATGCTAACACAAATTATGAC
genomic: TAGCTCAGCACTTATCACATTTTGGTATCGATTTTTCTTCACTCCAAAAGgtgagttagg ... gttcttgcagACTGAGATGACTACTGCTGAGAGGGAACTTGATGCTAACACAAATTATGAC
EST:
gi|211413392|gb|FL397573.1|FL397573EST: TAGCTCAGCACTTATCACATTTTGGTATCGATTTTTCTTCACTCCAAAAG ACTGAGATGACTACTGCTGAGAGGGAACTTGATGCTAACACAAATTATGAC
genomic: TAGCTCAGCACTTATCACATTTTGGTATCGATTTTTCTTCACTCCAAAAGgtgagttagg ... gttcttgcagACTGAGATGACTACTGCTGAGAGGGAACTTGATGCTAACACAAATTATGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtacatagaggcaattttatgcttggccacattgtttataaatttgttcttgcagACTGAGATGACTACTGCTGAGAGGGAACTTGATGCTAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGAAAAGACGCTGAGCTTCTGTTTGGAC
tttgttctt CT-rich tract
attgtttataaatttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatgttacagctgatgcataatacagtttttttcctgcttgacatgtacatagaggcaattttatgcttggccacattgtttataaatttgttcttgcagACTGAGATGACTACTGCTGAGAGGGAACTTGATGCTAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGAAAAGACGCTGAGCTTCTGTTTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT