1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ggattgggctgagggttttaagggtctcttggagatgctcttagatctttatggatgttctgggacttaaactatttgtgatctacaattcctttcgcagAAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCTTCAGACTTCAGCTATCTTCCAGACGTTAGCATACCTGGTGACAGGGCTC
species | Zea mays |
transcript | GRMZM2G101217_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAAAAGTATTCCCAAAGCCTCGTAGAGCTTGGTTGCCCACCGGCTGCTTG AAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCTEST: gi|71418851|gb|DR804567.1|DR804567
genomic: CAAAAGTATTCCCAAAGCCTCGTAGAGCTTGGTTGCCCACCGGCTGCTTGgtatggcttt ... cctttcgcagAAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCT
EST: CAAAAGTATTCCCAAAGCCTCGTAGAGCTTGGTTGCCCACCGGCTGCTTG AAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCTEST: gi|71763051|gb|DR960988.1|DR960988
genomic: CAAAAGTATTCCCAAAGCCTCGTAGAGCTTGGTTGCCCACCGGCTGCTTGgtatggcttt ... cctttcgcagAAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCT
EST: CAAAAGTATTCCCAAAGCCTCGTAGAGCTTGGTTGCCCACCGGCTGCTTG AAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCTEST: gi|76281531|gb|DV021099.1|DV021099
genomic: CAAAAGTATTCCCAAAGCCTCGTAGAGCTTGGTTGCCCACCGGCTGCTTGgtatggcttt ... cctttcgcagAAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCT
EST: CAAAAGTATTCCCAAAGCCTCGTAGAGCTTGGTTGCCCACCGGCTGCTTG AAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCTEST: gi|148960596|gb|EE011218.2|EE011218
genomic: CAAAAGTATTCCCAAAGCCTCGTAGAGCTTGGTTGCCCACCGGCTGCTTGgtatggcttt ... cctttcgcagAAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCT
EST: CAAAAGTATTCCCAAAGCCTCGTAGAGCTTGGTTGCCCACCGGCTGCTTG AAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCTEST: gi|71418854|gb|DR804568.1|DR804568
genomic: CAAAAGTATTCCCAAAGCCTCGTAGAGCTTGGTTGCCCACCGGCTGCTTGgtatggcttt ... cctttcgcagAAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCT
EST: AAA-GTATTCCCAAAGCCTCGTAGAGCTTGGTTGCCCCACCG-CTGCTTG AAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTAEST: gi|76924071|gb|DV169789.1|DV169789
genomic: AAAAGTATTCCCAAAGCCTCGTAGAGCTTGGTTGCCC-ACCGGCTGCTTGgtatggcttt ... cctttcgcagAAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTA
EST: CAAAAGTATTCCCAAAGCCTCGTAGAGCTTGGTTGCCCACCGGCTGCTTG AAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCT
genomic: CAAAAGTATTCCCAAAGCCTCGTAGAGCTTGGTTGCCCACCGGCTGCTTGgtatggcttt ... cctttcgcagAAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCT
tctttatggatgttctgggacttaaactatttgtgatctacaattcctttcgcagAAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCTTCAGACTTCAGCTATCTTCCAGACGTTAGCATACCTGGTGACAGGGCTC
ttcctttcgc CT-rich tract
ttaaactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggattgggctgagggttttaagggtctcttggagatgctcttagatctttatggatgttctgggacttaaactatttgtgatctacaattcctttcgcagAAACTAATGGATACTCTACATCAAGCTTTACCGAGCATGTCCCTTATTGCTTCAGACTTCAGCTATCTTCCAGACGTTAGCATACCTGGTGACAGGGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT