1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtattttctataatccaaatagtattttgtgttttcacccgcagacatcaaacctcacaatcaatgtgatatagATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAACCCTCGATGGGTTGATGGAGAGCTTTTGATAATAGATGGAAAG
species | Zea mays |
transcript | GRMZM2G079428_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACGCTATCAGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTG ATTGCTAGGTACAAGGGGCEST: gi|60354927|gb|DN221900.1|DN221900
genomic: AACGCTATCAGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTGgtattttcta ... tgtgatatagATTGCTAGGTACAAGGGGC
EST: GGGAATTATCCCTAGAGAACTTGGAGTG ATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAACEST: gi|211222234|gb|FL086602.1|FL086602
genomic: GGGAATTATCCCTAGAGAACTTGGAGTGgtattttcta ... tgtgatatagATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAAC
EST: AACGCTATCAGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTG ATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAACEST: gi|7135032|gb|AW497882.1|AW497882
genomic: AACGCTATCAGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTGgtattttcta ... tgtgatatagATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAAC
EST: CAGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTG ATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAAC
genomic: CAGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTGgtattttcta ... tgtgatatagATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAAC
tagtattttgtgttttcacccgcagacatcaaacctcacaatcaatgtgatatagATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAACCCTCGATGGGTTGATGGAGAGCTTTTGATAATAGATGGAAAG
acctcac putative branch site (score: 73)
aatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttctataatccaaatagtattttgtgttttcacccgcagacatcaaacctcacaatcaatgtgatatagATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAACCCTCGATGGGTTGATGGAGAGCTTTTGATAATAGATGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA