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...aaaatttgaaatattgatggttaaagctaaaagatttgacttaggagaaaattaaacaggagtaagtacttgaactaataatccttgtatcttgtctcagGGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCTAGCGCATGCCTCAGTGACGGATGGCATCAGCCAACCGAGCTTGAGTGAG
species | Zea mays |
transcript | GRMZM2G062761_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAAAA-ACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAG GGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCTEST: gi|9953907|gb|BE640490.1|BE640490
genomic: AAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAGgttctcatca ... cttgtctcagGGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCT
EST: AAGGGTGNNNNNNNCAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAG GGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCTEST: gi|71444394|gb|DR825444.1|DR825444
genomic: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAGgttctcatca ... cttgtctcagGGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCT
EST: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAG GGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCTEST: gi|148942758|gb|EC887784.2|EC887784
genomic: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAGgttctcatca ... cttgtctcagGGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCT
EST: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAG GGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCTEST: gi|71326217|gb|DR799803.1|DR799803
genomic: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAGgttctcatca ... cttgtctcagGGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCT
EST: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAG GGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCTEST: gi|71430391|gb|DR811441.1|DR811441
genomic: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAGgttctcatca ... cttgtctcagGGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCT
EST: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAG GGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCTEST: gi|32934687|gb|CF039499.1|CF039499
genomic: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAGgttctcatca ... cttgtctcagGGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCT
EST: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAG GGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCTEST: gi|6952802|gb|AW424870.1|AW424870
genomic: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAGgttctcatca ... cttgtctcagGGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCT
EST: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAG GGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCTEST: gi|76018132|gb|DT945302.1|DT945302
genomic: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAGgttctcatca ... cttgtctcagGGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCT
EST: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAG GGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCT
genomic: AAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCAAGgttctcatca ... cttgtctcagGGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCT
agaaaattaaacaggagtaagtacttgaactaataatccttgtatcttgtctcagGGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCTAGCGCATGCCTCAGTGACGGATGGCATCAGCCAACCGAGCTTGAGTGAG
aactaat putative branch site (score: 2)
tcttgtctc putative PPT
aactaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatttgaaatattgatggttaaagctaaaagatttgacttaggagaaaattaaacaggagtaagtacttgaactaataatccttgtatcttgtctcagGGAAAGAGTAATTGGCAATAAACATGGAGATGGCAATACAGGTGATAAGCTAGCGCATGCCTCAGTGACGGATGGCATCAGCCAACCGAGCTTGAGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT