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...gtgttctcttaatcttctacatttatggtgctgtatgatcaattcagtgtaatagaaccattgtgctgatatgctggcttttcctccaacaaactatcagGCTGGAAAAAAGTTGCTTCTCATTACTAATTCAGATTTCCATTATACAAACAAAATGATGAATCATGCATTCAATCGCTTTCTTCCTAATGATGTGGGAT
species | Zea mays |
transcript | GRMZM2G044819_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGCTCTTCTTGATCAAAAAGAG GCTGGAAAAAAGTTGCTTCTCATTACTAATTCAGATTTCCATTATACAAACEST: gi|32937883|gb|CF042702.1|CF042702
genomic: AGCTCTTCTTGATCAAAAAGAGgttagcacag ... aaactatcagGCTGGAAAAAAGTTGCTTCTCATTACTAATTCAGATTTCCATTATACAAAC
EST: TTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAG GCTGGAAAAAAGCTGCTTCTCATTACTAATTCAGATTTCCATTATACAAACEST: gi|87156662|gb|DY401451.1|DY401451
genomic: TTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAGgttagcacag ... aaactatcagGCTGGAAAAAAGTTGCTTCTCATTACTAATTCAGATTTCCATTATACAAAC
EST: TTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAG GCTGGAAAAAAGTTGCTTCTCATTAEST: gi|32833943|gb|CD973621.1|CD973621
genomic: TTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAGgttagcacag ... aaactatcagGCTGGAAAAAAGTTGCTTCTCATTA
EST: TTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAG GCTGGAAAAAAGTTGCTTCTCATTACTAATTCAGATTTCCATTATACAAAC
genomic: TTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAGgttagcacag ... aaactatcagGCTGGAAAAAAGTTGCTTCTCATTACTAATTCAGATTTCCATTATACAAAC
agtgtaatagaaccattgtgctgatatgctggcttttcctccaacaaactatcagGCTGGAAAAAAGTTGCTTCTCATTACTAATTCAGATTTCCATTATACAAACAAAATGATGAATCATGCATTCAATCGCTTTCTTCCTAATGATGTGGGAT
tgctgat putative branch site (score: 3)
aatagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttctcttaatcttctacatttatggtgctgtatgatcaattcagtgtaatagaaccattgtgctgatatgctggcttttcctccaacaaactatcagGCTGGAAAAAAGTTGCTTCTCATTACTAATTCAGATTTCCATTATACAAACAAAATGATGAATCATGCATTCAATCGCTTTCTTCCTAATGATGTGGGAT
- - - - - - - - -tacattt
- - - - - - - - - - - - - ggtgctg
- - - - - - - - - - - - - - - - - - - - - - - - - aatagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat