1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagctattcacacagttatccaaatgtgaacatgtatacagacaacaactgacctatgcgttacattactttgttgaagGCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAG
species | Zea mays |
transcript | GRMZM2G044011_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA GCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCAEST: gi|67024357|gb|CO453106.1|CO453106
genomic: GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAAgtaagctatt ... tttgttgaagGCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCA
EST: GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA GCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCAEST: gi|71763506|gb|DR961443.1|DR961443
genomic: GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAAgtaagctatt ... tttgttgaagGCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCA
EST: GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA GCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCAEST: gi|71442136|gb|DR823186.1|DR823186
genomic: GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAAgtaagctatt ... tttgttgaagGCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCA
EST: GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA GCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCAEST: gi|32825337|gb|CD965059.1|CD965059
genomic: GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAAgtaagctatt ... tttgttgaagGCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCA
EST: GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA GCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCAEST: gi|76016282|gb|DT943452.1|DT943452
genomic: GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAAgtaagctatt ... tttgttgaagGCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCA
EST: GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA GCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCAEST: gi|89251335|gb|DY623121.1|DY623121
genomic: GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAAgtaagctatt ... tttgttgaagGCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCA
EST: GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA GCATTTCTGAAACACATTGATTTTGAAGTTGTTCC-GTGTACTGTAATTGC
genomic: GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAAgtaagctatt ... tttgttgaagGCATTTCTGAAACACATTGATTTTGAAGTTGT-CCAGTGTACTGTAATTGC
tgtgaacatgtatacagacaacaactgacctatgcgttacattactttgttgaagGCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAG
aactgac putative branch site (score: 2)
ttacttt putative PPT
ttacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctattcacacagttatccaaatgtgaacatgtatacagacaacaactgacctatgcgttacattactttgttgaagGCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG