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gtgagttctcatacaaaccgtctgttatgtgcctagcatacagtgcttacatctcttagcgagagtttgtctcaaaaaagttcctcattttgtaagttcactaatatgatctattccacagGTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGAGCTAGGATATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAG
species | Zea mays |
transcript | GRMZM2G010202_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACAATCCTGCTAAAATTCCTGCATTCTCAAGGGAGTGCCTGAGGCAAGCT GTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGAEST: gi|86467008|gb|DY233378.1|DY233378
genomic: ACAATCCTGCTAAAATTCCTGCATTCTCAAGGGAGTGCCTGAGGCAAGCTgtgagttctc ... tattccacagGTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGA
EST: ACAATCCTGCTAAAATTCCTGCATTCTCAAGGGAGTGCCTGAGGCAAGCT GTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGAEST: gi|148947745|gb|EC893228.2|EC893228
genomic: ACAATCCTGCTAAAATTCCTGCATTCTCAAGGGAGTGCCTGAGGCAAGCTgtgagttctc ... tattccacagGTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGA
EST: ACAATCCTGCTAAAATTCCTGCATTCTCAAGGGAGTGCCTGAGGCAAGCT GTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGAEST: gi|37374692|gb|CF623727.1|CF623727
genomic: ACAATCCTGCTAAAATTCCTGCATTCTCAAGGGAGTGCCTGAGGCAAGCTgtgagttctc ... tattccacagGTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGA
EST: CTGCTAAAATTCCTGCATTCTCAAGGGAGTGCCTGAGGCAAGCT GTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGAEST: gi|211322417|gb|FL451105.1|FL451105
genomic: CTGCTAAAATTCCTGCATTCTCAAGGGAGTGCCTGAGGCAAGCTgtgagttctc ... tattccacagGTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGA
EST: ACAATCCTGCTAAAATTCCTGCATTCTCAAGGGAGTGCCTGAGGCAAGCT GTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGAEST: gi|211322418|gb|FL451106.1|FL451106
genomic: ACAATCCTGCTAAAATTCCTGCATTCTCAAGGGAGTGCCTGAGGCAAGCTgtgagttctc ... tattccacagGTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGA
EST: ACAATCCTGCTAAAATTCCTGCATTCTCAAGGGAGTGCCTGAGGCAAGCT GTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGA
genomic: ACAATCCTGCTAAAATTCCTGCATTCTCAAGGGAGTGCCTGAGGCAAGCTgtgagttctc ... tattccacagGTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGA
ttgtctcaaaaaagttcctcattttgtaagttcactaatatgatctattccacagGTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGAGCTAGGATATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAG
cactaat putative branch site (score: 2)
tctattcc putative PPT
taatatgatctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttctcatacaaaccgtctgttatgtgcctagcatacagtgcttacatctcttagcgagagtttgtctcaaaaaagttcctcattttgtaagttcactaatatgatctattccacagGTTGCTGTTGTTACTGTTGCATTTCCTGCCACGCCACTTCTACTTGCGAGAGCTAGGATATGTATCTCAGCTTCCCACTCCAGGGAAGATCTCATAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA