1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aacccacatcgttccgaaaccaaacacatgcttggagtccaaagaaaagtttgcgcttaccattgttgctagtactttattgattaacctatctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTTGGAGTCTCATTTTCAGCAGCAAGAAGTCAGCATGACCAAATTGCTCGT
species | Zea mays |
transcript | GRMZM2G003692_T05 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|31362808|gb|CD447165.1|CD447165
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|67023347|gb|CO452096.1|CO452096
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATEST: gi|166410271|gb|EG044485.1|EG044485
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGAT
EST: CAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|211495955|gb|FL480154.1|FL480154
genomic: CAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|71320805|gb|DR797121.1|DR797121
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATEST: gi|211078663|gb|FL128724.1|FL128724
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGAT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|60353742|gb|DN220715.1|DN220715
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|5915523|gb|AW053164.1|AW053164
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|91877563|gb|EB407520.1|EB407520
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATEST: gi|88757474|gb|DY541615.1|DY541615
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGAT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATEST: gi|32909212|gb|CF014024.1|CF014024
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGAT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|32864068|gb|CF003750.1|CF003750
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|32940945|gb|CF045764.1|CF045764
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: ACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|88753506|gb|DY537647.1|DY537647
genomic: ACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATEST: gi|37387558|gb|CF630976.1|CF630976
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGAT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCEST: gi|31363218|gb|CD447575.1|CD447575
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGC
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|6022668|gb|AW067596.1|AW067596
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|5343223|gb|AI795408.1|AI795408
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGGGCTGGGATGGCGGCCGCAAAGAAAGGGAACACGTAEST: gi|7227555|gb|AW566196.1|AW566196
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGG--CTGG-ATG-CGGCCGCAAAGAAAGGGAACACGTA
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|12968787|gb|BG265824.1|BG265824
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|113703640|gb|EE681144.1|EE681144
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCEST: gi|78021266|gb|DV489653.1|DV489653
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGC
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|211078661|gb|FL128722.1|FL128722
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|91872747|gb|EB402704.1|EB402704
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATEST: gi|6101980|gb|AW126450.1|AW126450
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGAT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|32919094|gb|CF023906.1|CF023906
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|6095476|gb|AW120143.1|AW120143
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|93015973|gb|EB641493.1|EB641493
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATCCATGCCACCAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATEST: gi|22935891|gb|BU572166.1|BU572166
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGAT
EST: TGTACTTGGTGCAATACATGCCCACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|32856553|gb|CD996234.1|CD996234
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|71758502|gb|DR956439.1|DR956439
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATEST: gi|37376662|gb|CF624883.1|CF624883
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGAT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCEST: gi|37390564|gb|CF632514.1|CF632514
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGC
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCEST: gi|88757473|gb|DY541614.1|DY541614
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGC
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATEST: gi|71768646|gb|DR966583.1|DR966583
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGAT
EST: TGTACTTGGTGCAATACATGCCACCAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATEST: gi|32864069|gb|CF003751.1|CF003751
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGAT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTEST: gi|6194694|gb|AW146798.1|AW146798
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGT
EST: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAG GTTGGTGCAAAACGGC
genomic: TGTACTTGGTGCAATACATGCCAACAATTGGTTATTGGCTAATGGACAAGgtatttcttc ... atctttccagGTTGGTGCAAAACGGC
aaagtttgcgcttaccattgttgctagtactttattgattaacctatctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTTGGAGTCTCATTTTCAGCAGCAAGAAGTCAGCATGACCAAATTGCTCGT
gattaac putative branch site (score: 2)
cctatctttcc CT-rich tract
tactttattgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacccacatcgttccgaaaccaaacacatgcttggagtccaaagaaaagtttgcgcttaccattgttgctagtactttattgattaacctatctttccagGTTGGTGCAAAACGGCTGGATGCGGCCGCAAAGAAAGGGAACACGTATAGTTGGAGTCTCATTTTCAGCAGCAAGAAGTCAGCATGACCAAATTGCTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT