1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gttcattatcacattaaacatcattattcattatcatattaattatatcaaatgtctaagtccctcaagttctggccgcacctttccagcatgtgagtgattagaaatttttatgtagGTTGCCCCAACGTTGGTTCCTCTGCTGAAGTTTTACTTCCATGAGGAAGTCAGGAGAGCTGCTGTTGCGG
species | Zea mays |
transcript | GRMZM5G887631_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCTGCTATGCTGATGAGCTTAAGGAGGGTTTCTTCCCATGGATTGATCAG GTTGCCCCAACTTTGGTTCCACTGCTGAAGTTTTACTTCCATGAGGAAGTCEST: gi|32937521|gb|CF042340.1|CF042340
genomic: GCTGTTATGCTGATGAGCTTAAGGAGGGTTTCTTCCCATGGATTGATCAGgttcattatc ... ttttatgtagGTTGCCCCAACGTTGGTTCCTCTGCTGAAGTTTTACTTCCATGAGGAAGTC
EST: CTGCTATGCTGATGAGCTTAAGGAGGGTTTCTTTCCCATGGATTGATCAG GTTGCCCCAACTTTGGTTCCACTGCTGAAGTTTTACTTCCATGAGGAAGTCEST: gi|71770782|gb|DR968719.1|DR968719
genomic: CTGTTATGCTGATGAGCTTAAGGAGGGTTTCTT-CCCATGGATTGATCAGgttcattatc ... ttttatgtagGTTGCCCCAACGTTGGTTCCTCTGCTGAAGTTTTACTTCCATGAGGAAGTC
EST: GCTGTTATGCTGATGAGCTTAAGGAGGGTTTCTTCCCATGGATTGATCAG GTTGCCCCAACGTTGGTTCCTCTGCTGAAGTTTTACTTCCATGAGGAAGTCEST: gi|32935366|gb|CF040178.1|CF040178
genomic: GCTGTTATGCTGATGAGCTTAAGGAGGGTTTCTTCCCATGGATTGATCAGgttcattatc ... ttttatgtagGTTGCCCCAACGTTGGTTCCTCTGCTGAAGTTTTACTTCCATGAGGAAGTC
EST: GCTGCTATGCTGATGAGCTTAAGGAGGGTTTCTTCCCATGGATTGATCAG GTTGCCCCAACTTTGGTTCCACTGCTGAAGTTTTACTTCCATGAGGAAGTCEST: gi|32935549|gb|CF040361.1|CF040361
genomic: GCTGTTATGCTGATGAGCTTAAGGAGGGTTTCTTCCCATGGATTGATCAGgttcattatc ... ttttatgtagGTTGCCCCAACGTTGGTTCCTCTGCTGAAGTTTTACTTCCATGAGGAAGTC
EST: GCTGCTATGCTGATGAGCTTAAGGAGGGTTTCTTCCCATGGATTGATCAG GTTGCCCCAACTTTGGTTCCACTGCTGAAGTTTTACTTCCATGAGGAAGTCEST: gi|32850147|gb|CD989828.1|CD989828
genomic: GCTGTTATGCTGATGAGCTTAAGGAGGGTTTCTTCCCATGGATTGATCAGgttcattatc ... ttttatgtagGTTGCCCCAACGTTGGTTCCTCTGCTGAAGTTTTACTTCCATGAGGAAGTC
EST: GCTGCTATGCTGATGAGCTTAAGGAGGGTTTCTTCCCATGGATTGATCAG GTTGCCCCAACTTTGGTTCCACTGCTGAAGTTTTACTTCCATGAGGAAGTCEST: gi|32937789|gb|CF042608.1|CF042608
genomic: GCTGTTATGCTGATGAGCTTAAGGAGGGTTTCTTCCCATGGATTGATCAGgttcattatc ... ttttatgtagGTTGCCCCAACGTTGGTTCCTCTGCTGAAGTTTTACTTCCATGAGGAAGTC
EST: GCTGCTATGCTGATGAGCTTAAGGAGGGTTTCTTCCCATGGATTGATCAG GTTGCCCCAACTTTGGTTCCACTGCTGAAGTTTTACTTCCATGAGGAAGTCEST: gi|32850586|gb|CD990267.1|CD990267
genomic: GCTGTTATGCTGATGAGCTTAAGGAGGGTTTCTTCCCATGGATTGATCAGgttcattatc ... ttttatgtagGTTGCCCCAACGTTGGTTCCTCTGCTGAAGTTTTACTTCCATGAGGAAGTC
EST: GCTGCTATGCTGATGAGCTTAAGGAGGGTTTCTTCCCATGGATTGATCAG GTTGCCCCAACTTTGGTTCCACTGCTGAAGTTTTACTTCCATGAGGAAGTC
genomic: GCTGTTATGCTGATGAGCTTAAGGAGGGTTTCTTCCCATGGATTGATCAGgttcattatc ... ttttatgtagGTTGCCCCAACGTTGGTTCCTCTGCTGAAGTTTTACTTCCATGAGGAAGTC
ctcaagttctggccgcacctttccagcatgtgagtgattagaaatttttatgtagGTTGCCCCAACGTTGGTTCCTCTGCTGAAGTTTTACTTCCATGAGGAAGTCAGGAGAGCTGCTGTTGCGG
tttttat CT-rich tract
attagaaatttttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcattatcacattaaacatcattattcattatcatattaattatatcaaatgtctaagtccctcaagttctggccgcacctttccagcatgtgagtgattagaaatttttatgtagGTTGCCCCAACGTTGGTTCCTCTGCTGAAGTTTTACTTCCATGAGGAAGTCAGGAGAGCTGCTGTTGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT