1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...atgcaacgttccttgcataatgagctttgctagcagttatttgtaagatcaatgcatgacagttttatttatgtcttgtgctattccttttgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG
species | Zea mays |
transcript | GRMZM5G866758_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCCTGGATAAG TTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTEST: gi|31909501|gb|CD650950.1|CD650950
genomic: GCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGT
EST: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAG TTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTEST: gi|18661821|gb|BM501596.1|BM501596
genomic: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGT
EST: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAG TTTGACCCAGTAAAACTAAAGAAACTTCGCCCA-GTTTCAAGGAGAATGGTEST: gi|93281704|gb|EB673968.1|EB673968
genomic: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGT
EST: ATTGAGAGAGATGAAAGCCTGGATAAG TTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTEST: gi|76284260|gb|DV023828.1|DV023828
genomic: ATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGT
EST: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAG TTTGACCCAGTAAAACTEST: gi|76921549|gb|DV168617.1|DV168617
genomic: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACT
EST: ATTGAGAGAGATGAAAGCCTGGATAAG TTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTEST: gi|18450558|gb|BM428836.1|BM428836
genomic: ATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGT
EST: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAG TTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTEST: gi|76284259|gb|DV023827.1|DV023827
genomic: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGT
EST: TAGAGGAAAACCCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAG TTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTEST: gi|18654813|gb|BM499618.1|BM499618
genomic: TAGAGGAAAA-CCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGT
EST: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAG TTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTEST: gi|87152006|gb|DY396795.1|DY396795
genomic: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGT
EST: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAG TTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTEST: gi|211292808|gb|FL187022.1|FL187022
genomic: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGT
EST: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAG TTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTEST: gi|32864390|gb|CF004072.1|CF004072
genomic: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGT
EST: AAGCCTGGATAAG TTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTEST: gi|22490195|gb|BU050118.1|BU050118
genomic: AAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGT
EST: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAG TTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCATTTATAATGGTEST: gi|31353258|gb|CD437615.1|CD437615
genomic: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGT
EST: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGNATAAG TTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGATEST: gi|78091716|gb|DV520090.1|DV520090
genomic: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGT
EST: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAG TTTGACCCAGTNAAACTAAAGAAACTTTCGCCCAAGTTTTCA-GGAGAATGEST: gi|67042602|gb|CO468857.1|CO468857
genomic: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTT-CGCCCAAGTTT-CAAGGAGAATG
EST: GGAGAGGAACACCCCCAACATTAATTGAGAGAGAGGAA-GCCTGGATAAG TGTGACCCAGTAAAEST: gi|76921562|gb|DV168618.1|DV168618
genomic: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAA
EST: GTAGAGGAAAACCCCCCACATTAATTGAGAGAGATGAAAGCCTGGATAAG TTTGACCCAGTAAAACTAAAGAA
genomic: GTAGAGGAAAACCCCCAACATTAATTGAGAGAGATGAAAGCCTGGATAAGgtattttttc ... tgtgtcttagTTTGACCCAGTAAAACTAAAGAA
agatcaatgcatgacagttttatttatgtcttgtgctattccttttgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG
ttccttttgtgtctt CT-rich tract
ttttatttatgtctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcaacgttccttgcataatgagctttgctagcagttatttgtaagatcaatgcatgacagttttatttatgtcttgtgctattccttttgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA