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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattttcttaactatacatcacttgttctgcaacatgtactttccacatatccttccttgccggttcatctgaatgaccaatttcttctgatgtttcagGAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAAATGAATACAATTTGATGTTGTGAGCTCTCATGTGTACCAG

Basic information

species Zea mays
transcript GRMZM2G468693_T01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211529896|gb|FL379285.1|FL379285
EST:     CTTCCTGAGGGGAAAGGCGTTATAAAGTGTGATACATCTGAAGATTTAGC                         GAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAAYAGGAA
genomic: CTTCCTGAGGGGAAAGGCGTTATAAAGTGTGATACATCTGAAGATTTAGCgtaagttcag ... gatgtttcagGAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAA
EST: gi|211300563|gb|FL370635.1|FL370635
EST:     CTTCCTGAGGGGAAAGGCGTTATAAAGYGTGATACATCTGAAGATTTAGC                         GAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAA
genomic: CTTCCTGAGGGGAAAGGCGTTATAAAGTGTGATACATCTGAAGATTTAGCgtaagttcag ... gatgtttcagGAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacatatccttccttgccggttcatctgaatgaccaatttcttctgatgtttcagGAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAAATGAATACAATTTGATGTTGTGAGCTCTCATGTGTACCAG
                                         ttctgat  putative branch site (score: 3)
                                     tttcttctg  CT-rich tract
                                   aatttctt  TA-rich tract