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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatctagctcttgaactttatatttattagtctatcaatatatttacaatttgcgtccacattggtaaagcctcattagaactctagcttatctgagtactccgtttgatttcagGAACATTTATCAAAAGACGATGCACGGCAACAATTTCTCAGAATCTTAAGGACTCTTCCATATGGGAACTCTGTTTTCTTTAGTGTCCGTAAGATTGATG

Basic information

species Zea mays
transcript GRMZM2G423861_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G423861_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os04g57140.1 (Oryza sativa), 3'ss of exon 8
gtatttatctagctcttgaactttatatttattagtctatcaatatattta-caatttgcgtccacattggtaaagcctcattagaact-ctagcttatctgagtactccgt--ttgatttcagGAACATTTATCAAAAGACGATGCACGGCAACAATTTCTCAGAATCTTAAGGACTCTTCCATATGGGAACTCTGTTTTCTTTAGTGTCCGTAAGATTGATG
                       | ||  |  |  |  |  | || ||||  ||||| |     ||||  | |||   |  ||   ||| ||   ||| || ||| ||   |  |||  ||||||||||| | |||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||
----------------------atgtaagttgtgatgaaatagtaaatttctcaattcgaacttacat--gcaaaatatgcttgatacttctcaattacctaagtgctttattgttgcattcagGAACATCTGTCAAAAGATGATGCAAGGCAACAGTTTCTCAGAATCTTAAGGACTCTTCCATATGGGAACTCAGTTTTCTTCAGTGTCCGGAAGATTGATG

upper sequence: GRMZM2G423861_T01 (Zea mays), 3'ss of exon 9
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 3'ss of exon 9
gtatttatctagctcttgaactttatatttattagtctatcaatatatttacaatttgcgtccacattggtaaagcctcattagaactctagcttatctgagtactccgtttgatttcagGAACATTTATCAAAAGACGATGCACGGCAACAATTTCTCAGAATCTTAAGGACTCTTCCATATGGGAACTCTGTTTTCTTTAGTGTCCGTAAGATTGATG
                ||   ||| |  |  |   | | | |||    | | ||||| | |||| |     ||         |  | |     | || | | ||    | |  || | ||||||||||  ||||||| |||||| | ||||||||||| || ||||| || || || || |||||||| || |||||||||||||| || ||||||||||
----------------tggtttttcttgtggtccttttttaaatgatctcaaaattt-catccata--aagaagatgatgacaatatttcttttgatttaattatgttgctgtatat-agGAACATTTGACAAAAGATGATGCAAGACAACAATTTCTAAGGATCTTGAGAACACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attggtaaagcctcattagaactctagcttatctgagtactccgtttgatttcagGAACATTTATCAAAAGACGATGCACGGCAACAATTTCTCAGAATCTTAAGGACTCTTCCATATGGGAACTCTGTTTTCTTTAGTGTCCGTAAGATTGATG
                                           gtttgat  putative branch site (score: 5)
                                       ctccgttt  CT-rich tract
                                            tttgattt  TA-rich tract