1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaggttctgtcaagtttctctgtttggtaccatttctgttctaattggaacaacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTACAGGACCTCGCTATCCTTACCGGAGGAGAG
species | Zea mays |
transcript | GRMZM2G416120_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTAEST: gi|31349659|gb|CD434016.1|CD434016
genomic: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtaggttctg ... caacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTA
EST: GTGAAGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCTCG GTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTAEST: gi|71425566|gb|DR806758.1|DR806758
genomic: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtaggttctg ... caacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTA
EST: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTAEST: gi|78078493|gb|DV506906.1|DV506906
genomic: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtaggttctg ... caacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTA
EST: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTAEST: gi|32929020|gb|CF033832.1|CF033832
genomic: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtaggttctg ... caacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTA
EST: ACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTAEST: gi|18450761|gb|BM429039.1|BM429039
genomic: ACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtaggttctg ... caacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTA
EST: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTAEST: gi|87152342|gb|DY397131.1|DY397131
genomic: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtaggttctg ... caacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTA
EST: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTAEST: gi|32944170|gb|CF048989.1|CF048989
genomic: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtaggttctg ... caacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTA
EST: ACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTAEST: gi|32932633|gb|CF037445.1|CF037445
genomic: ACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtaggttctg ... caacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTA
EST: GTGCAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTAEST: gi|67019174|gb|CO447923.1|CO447923
genomic: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtaggttctg ... caacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTA
EST: GTGAAGCATTGGGTACTCTGATTAT-AACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACANGAAGGCANACTTAEST: gi|32931719|gb|CF036531.1|CF036531
genomic: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtaggttctg ... caacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTA
EST: AGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTAEST: gi|33103385|gb|CF063345.1|CF063345
genomic: AGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtaggttctg ... caacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTA
EST: ACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTAEST: gi|22489874|gb|BU049797.1|BU049797
genomic: ACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtaggttctg ... caacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTA
EST: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTA
genomic: GTGAAGCATTAGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtaggttctg ... caacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTA
tctgtcaagtttctctgtttggtaccatttctgttctaattggaacaacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTACAGGACCTCGCTATCCTTACCGGAGGAGAG
ttctaat putative branch site (score: 180)
ttctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttctgtcaagtttctctgtttggtaccatttctgttctaattggaacaacattcagGTCTGTGCTGTCAAAGCTCCTGGTTTTGGGGAAAACAGGAAGGCAAACTTACAGGACCTCGCTATCCTTACCGGAGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA