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gctagatctcttcctttgttgcctggagtatttcattacacagatatagagaaacaagtattagttgtcatagatttggtccaatgttctgtagttagcggctaatgtatcttttcatcttttttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAGAGCTGCTTGCAGAAGGAAAAGTTCCTATTGGGATTGGAGAGAATACAA
species | Zea mays |
transcript | GRMZM2G391936_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATAGTGTTGTTGGAGTTCGTTTTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|13236975|gb|BG354989.1|BG354989
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: CGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|71324302|gb|DR798853.1|DR798853
genomic: CGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|27753904|gb|BM378096.1|BM378096
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: TGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|24763417|gb|CA398592.1|CA398592
genomic: TGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|93281647|gb|EB673911.1|EB673911
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|211232745|gb|FL322840.1|FL322840
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|110195335|gb|EC877232.1|EC877232
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|13558450|gb|BG549806.1|BG549806
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|13126504|gb|BG317074.1|BG317074
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: TTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAGCTGCCGTGGAAAGAGGAEST: gi|211470047|gb|FL442813.1|FL442813
genomic: TTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|18178292|gb|BM379502.1|BM379502
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|71429962|gb|DR811012.1|DR811012
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|71323466|gb|DR798382.1|DR798382
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|89763297|gb|DY690558.1|DY690558
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|31363279|gb|CD447636.1|CD447636
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTCCCGTGGAAAGAGGAEST: gi|32850355|gb|CD990036.1|CD990036
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|16377759|gb|BI992107.1|BI992107
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCCCCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|31348918|gb|CD433275.1|CD433275
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|12967897|gb|BG264844.1|BG264844
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|50335821|gb|CO530947.1|CO530947
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|31362917|gb|CD447274.1|CD447274
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAEST: gi|78103575|gb|DV522003.1|DV522003
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
EST: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAG GATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
genomic: ATAGTGTTGTTGGAGTTCGTTCTCGGATAGGCTCCAATGTGCACCTCAAGgctagatctc ... ttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGA
gtccaatgttctgtagttagcggctaatgtatcttttcatcttttttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAGAGCTGCTTGCAGAAGGAAAAGTTCCTATTGGGATTGGAGAGAATACAA
ggctaat putative branch site (score: 3)
tgtatcttttcatctt CT-rich tract
ttttcatctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctagatctcttcctttgttgcctggagtatttcattacacagatatagagaaacaagtattagttgtcatagatttggtccaatgttctgtagttagcggctaatgtatcttttcatcttttttccctgcagGATACTGTAATGCTTGGCGCTGATTATTATGAAACTGCCGTGGAAAGAGGAGAGCTGCTTGCAGAAGGAAAAGTTCCTATTGGGATTGGAGAGAATACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA