Sequence
atgc intronic sequence ATGC exonic sequencegtaagtattcaacaggagaataacttagggaacaacattgaatttgaattaacttaatgtgagacttcgaatgtggcagCCGAGGAAGATCCAGAGGTGCATCTTGGCCAGCTTAAAAGATTTTCACTACGAGAATTACAAGTTGCAACAGATGGCTTCAGCAATAAGAACATTCTTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G384439_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os08g07760.1 (Oryza sativa), 3'ss of exon 8
gtaagtattcaacaggagaa--taacttagggaacaacattgaatttgaattaacttaatgtgagacttcgaatgtggcagCCGAGGAAGATCCAGAGGTGCATCTTGGCCAGCTTAAAAGATTTTCACTACGAGAATTACAAGTTGCAACAGATGGCTTCAGCAATAAGAACATTCTTGG
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gtaagcgtccaatagaacaagcgaacttggagaataatattgagccaactttgattga----gattcattatttgttacagCTGAGGAGGATCCAGAGGTCCATCTTGGCCAGCTTAAAAGATTTTCACTACGAGAACTACAAGTTGCAACAGATACCTTCAGCAATAAAAACATTCTCGG
upper sequence: GRMZM2G384439_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA02G08360.1 (Glycine max), 3'ss of exon 6
gtaagtattcaacaggagaataacttagggaacaacattgaatt--tgaattaacttaatgtga---gacttcgaat--gtggcagCCGAGGAAGATCCAGAGGTGCATCTTGGCCAGCTTAAAAGATTTTCACTACGAGAATTACAAGTTGCAACAGATGGCTTCAGCAATAAGAACATTCTTGG
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gtgagctatcc-catcctattcaatt-gaatactgtattggttgaataaattaattggatggaatttgacttacatctaattacagCTGAAGAGGATCCTGAAGTACACCTTGGGCAGCTTAAGAGGTTCTCATTACGAGAACTGCAAGTTGCAACAGATACTTTCAGCAATAAGAACATTCTTGG
upper sequence: GRMZM2G384439_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA20G31320.1 (Glycine max), 3'ss of exon 8
gtaagtattcaacaggagaataacttagggaa---caacattgaatttgaattaacttaatgtgaga-cttcgaatgtg---gcagCCGAGGAAGATCCAGAGGTGCATCTTGGCCAGCTTAAAAGATTTTCACTACGAGAATTACAAGTTGCAACAGATGGCTTCAGCAATAAGAACATTCTTGG
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gtgagcaatca-tagaagaatgggtataacagtttctaaacctgtttaaagaatatatagtttgatttccttgcttatgtttgcagCTGAAGAGGATCCTGAAGTCCATCTGGGACAGCTTAAGAGGTTCTCACTACGAGAACTGCAAGTTGCAACAGATAGTTTCAGTAATAAGAACATTCTTGG
upper sequence: GRMZM2G384439_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA10G36280.1 (Glycine max), 3'ss of exon 8
gtaagtattcaacaggagaataacttagggaacaac---attgaatttgaattaacttaatgtgaga-cttcgaatgtg---gcagCCGAGGAAGATCCAGAGGTGCATCTTGGCCAGCTTAAAAGATTTTCACTACGAGAATTACAAGTTGCAACAGATGGCTTCAGCAATAAGAACATTCTTGG
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gtgagcaatcaa-agaagaatgggtataacagtttttgaacttatttaaagaatatataatttgatttccttgaatatgtttgcagCTGAAGAGGACCCTGAAGTCCATCTGGGACAGCTTAAGAGGTTCTCACTGCGAGAACTGCAAGTTGCAACGGATAGTTTCAGCAATAAGAACATTCTTGG
upper sequence: GRMZM2G384439_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv07s0031g01410.t01 (Vitis vinifera), 3'ss of exon 8
gtaagtattcaac---aggagaataacttagggaacaacattgaatttgaa--ttaacttaatgtgagacttcgaatgtggcagCCGAGGAAGATCCAGAGGTGCATCTTGGCCAGCTTAAAAGATTTTCACTACGAGAATTACAAGTTGCAACAGATGGCTTCAGCAATAAGAACATTCTTGG
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gtttgtactttacctaaaaaaaatggattaacttgattgtttggattttaaatttattttcattggctacatctctcct--cagCTGAAGAGGATCCGGAAGTCCACCTGGGGCAGCTCAAAAGGTTTTCCCTGCGAGAATTACAAGTTGCAACAGATAGCTTTAGCAACAAAAATATTCTGGG
upper sequence: GRMZM2G384439_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv18s0164g00070.t01 (Vitis vinifera), 3'ss of exon 8
gtaagtattcaacaggagaataacttagggaacaacattgaatttgaattaacttaatgtgagacttcgaatgtg-gcagCCGAGGAAGATCCAGAGGTGCATCTTGGCCAGCTTAAAAGATTTTCACTACGAGAATTACAAGTTGCAACAGATGGCTTCAGCAATAAGAACATTCTTGG
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gttagtggtttaactgaaaaagatt-----attaaccttgcgtatggataga-ttatcatttgtttacgtctctttgcagCTGAAGAGGACCCAGAGGTTCATCTGGGGCAGCTTAAAAGGTTTTCACTGCGAGAATTACAAGTTGCAACAGATAGTTTTAGCAACAAGAACATTCTGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26558051|gb|CA830286.1|CA830286EST: TGCCTATTGGCGGCGCAGGAAACCACAAGAACATTTCTTTGATGTACCTG CCGAGGAAGATCCAGAGGTGCATCTTGGCCAGCTTAAAAGATTTTCACTAC
genomic: TGCCTATTGGCGGCGCAGGAAACCACAAGAACATTTCTTTGATGTACCTGgtaagtattc ... aatgtggcagCCGAGGAAGATCCAGAGGTGCATCTTGGCCAGCTTAAAAGATTTTCACTAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagggaacaacattgaatttgaattaacttaatgtgagacttcgaatgtggcagCCGAGGAAGATCCAGAGGTGCATCTTGGCCAGCTTAAAAGATTTTCACTACGAGAATTACAAGTTGCAACAGATGGCTTCAGCAATAAGAACATTCTTGG
attgaatttgaattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtattcaacaggagaataacttagggaacaacattgaatttgaattaacttaatgtgagacttcgaatgtggcagCCGAGGAAGATCCAGAGGTGCATCTTGGCCAGCTTAAAAGATTTTCACTACGAGAATTACAAGTTGCAACAGATGGCTTCAGCAATAAGAACATTCTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC