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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtggaaatgaaattgctaggaatgaccatctagtttagtcctcagttcagctcacatattgttgccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGATGCTGGAACTCGGTGCTGAGTTATAGAGACGCGTCCTTCACTTATTTTT

Basic information

species Zea mays
transcript GRMZM2G143862_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143862_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os06g13810.1 (Oryza sativa), 3'ss of exon 15
gtatgtggaaatgaaattgctag-----------gaatgaccatc----tagtttagtcctcagttcagctcacatattgttgccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGATGCTGGAACTCGGTGCTGAGTTATAGAGACGCGTC-CTTCACTTATTTTT
||| ||||| ||| ||| |||||            |||||| ||      |   |||    || |         |  || |||| |  ||||| |||||||||||||| |||||||||||| | ||  ||||||||||||||||| |||||||||| || |||  |||||||  |    |   ||  |  |  
gtacgtggacatgcaatagctagcaagtagtgcaaaatgactataacagcaacatagagaacaatgacatgtttaatttcttgcga-aacagGTCCCATCCAGTTCAGTGGCCCTGGAAGCAACGATGCGAACCACACCTTGATGTTGGAACTCGGCGCCGAGGCATAGAGAGACACGACGATACCGACGTG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22521075|gb|BU079886.1|BU079886
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|24934232|gb|CA452450.1|CA452450
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|148933739|gb|EC877663.2|EC877663
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|8516679|gb|BE123404.1|BE123404
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|32945668|gb|CF050487.1|CF050487
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCCG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|15079595|gb|BI388765.1|BI388765
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|32837934|gb|CD977612.1|CD977612
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|9956252|gb|BE643540.1|BE643540
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCA
EST: gi|213170617|gb|FM193174.1|FM193174
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|78026256|gb|DV494643.1|DV494643
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|67021131|gb|CO449880.1|CO449880
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|32859024|gb|CD998705.1|CD998705
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|148934427|gb|EC878461.2|EC878461
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|149105031|gb|EE290510.2|EE290510
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|16918407|gb|BM073730.1|BM073730
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|211286471|gb|FL080392.1|FL080392
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|31359777|gb|CD444134.1|CD444134
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|8516411|gb|BE123137.1|BE123137
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|67023546|gb|CO452295.1|CO452295
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|37398696|gb|CF636665.1|CF636665
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGACCCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|4886023|gb|AI677143.1|AI677143
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|4630558|gb|AI621432.1|AI621432
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|22521074|gb|BU079885.1|BU079885
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAANNNNNNNTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|67020361|gb|CO449110.1|CO449110
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|211377905|gb|FL437238.1|FL437238
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|8516291|gb|BE123018.1|BE123018
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|24767218|gb|CA402362.1|CA402362
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|22715446|gb|BU197768.1|BU197768
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|15100393|gb|BI396184.1|BI396184
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|67015451|gb|CO444200.1|CO444200
EST:     CATCNGTTGAGG-ATGAGTGGGCCATCAAGAACAGATACANTCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACC-CACCTTG
genomic: CATC-GTTGAGGGATGAGTGGGCCATCAAGAACAGATACA-TCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTG
EST: gi|33102141|gb|CF062101.1|CF062101
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|78026598|gb|DV494985.1|DV494985
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACCCCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|67024935|gb|CO453684.1|CO453684
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|211286472|gb|FL080393.1|FL080393
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|4886138|gb|AI677258.1|AI677258
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|60343399|gb|DN210372.1|DN210372
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|60394144|gb|DN227014.1|DN227014
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|32849141|gb|CD988822.1|CD988822
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|37398146|gb|CF636382.1|CF636382
EST:     ATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: ATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|67012343|gb|CO441092.1|CO441092
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|32847266|gb|CD986947.1|CD986947
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|67021107|gb|CO449856.1|CO449856
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|6654183|gb|AW267588.1|AW267588
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|32836454|gb|CD976132.1|CD976132
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|5108301|gb|AI740014.1|AI740014
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|149081933|gb|EE171094.2|EE171094
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|87155550|gb|DY400339.1|DY400339
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|211286475|gb|FL080396.1|FL080396
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|6827945|gb|AW331588.1|AW331588
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCACCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|71324861|gb|DR799137.1|DR799137
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|32839102|gb|CD978783.1|CD978783
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|3157350|gb|AA979972.1|AA979972
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|26558921|gb|CA831156.1|CA831156
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
EST: gi|211286477|gb|FL080398.1|FL080398
EST:     TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG                         GCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA
genomic: TGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 243

CTGCACCTTTCAAGAAATATGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGATGCTGGAACTCGGTGCTGAGTTATAGAGACGCGTCCTTCACTTATTTTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 276

CTGCACCTTTCAAGAAATATGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGATGCTGGAACTCGGTGCTGAGTTATAGAGACGCGTCCTTCACTTATTTTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 300

CTGCACCTTTCAAGAAATATGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGATGCTGGAACTCGGTGCTGAGTTATAGAGACGCGTCCTTCACTTATTTTT


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 336

CTGCACCTTTCAAGAAATATGCATCGTTGAGGGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTGgtatgtggaa ... gccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGATGCTGGAACTCGGTGCTGAGTTATAGAGACGCGTCCTTCACTTATTTTT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaatgaccatctagtttagtcctcagttcagctcacatattgttgccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGATGCTGGAACTCGGTGCTGAGTTATAGAGACGCGTCCTTCACTTATTTTT
                              agctcac  putative branch site (score: 336)
                                     atattgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtggaaatgaaattgctaggaatgaccatctagtttagtcctcagttcagctcacatattgttgccatgacagGCCCCATCCAGTTCAGCGGCCCTGGAAGCGATGACTCGAACCACACCTTGATGCTGGAACTCGGTGCTGAGTTATAGAGACGCGTCCTTCACTTATTTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA