1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gcacttgctgtggctgcagctctataactacaaaatactgtagcgtgaactaaagaagctgcagccgcagtcagaaatgatgtgctcttgacatgtacagGAAATGGAGCGGTCTGCTGATGTGCTGTCTGCTGGTCTATTAGAAGTTGCAAATCCTTCTCTCTCAAGTAGATTCTTCCTAAAGCAG
species | Zea mays |
transcript | GRMZM2G135968_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGTTTCATGTCCGTACCAAAACTTACTTGGATGGAGCAATACTTAAAGAG GAAATGGAGCGGTCTGCTGATGTGCTGTCTGCTGGTCTATTAGAAGTTGCAEST: gi|31356608|gb|CD440965.1|CD440965
genomic: GGTTTCATGTCCGTACCAAAACTTACTTGGATGGAGCAATACTTAAAGAGgtctgttgga ... acatgtacagGAAATGGAGCGGTCTGCTGATGTGCTGTCTGCTGGTCTATTAGAAGTTGCA
EST: GGTTTCATGTTTTTACCAAAACTTACTTGGATGGAGCAATACTTAAAGAG GAAATGGAGCGGTCTGCTGATGTGCTGTCTGCTGGTCTATTAGAAGTTGCA
genomic: GGTTTCATGTCCGTACCAAAACTTACTTGGATGGAGCAATACTTAAAGAGgtctgttgga ... acatgtacagGAAATGGAGCGGTCTGCTGATGTGCTGTCTGCTGGTCTATTAGAAGTTGCA
tgaactaaagaagctgcagccgcagtcagaaatgatgtgctcttgacatgtacagGAAATGGAGCGGTCTGCTGATGTGCTGTCTGCTGGTCTATTAGAAGTTGCAAATCCTTCTCTCTCAAGTAGATTCTTCCTAAAGCAG
taaagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacttgctgtggctgcagctctataactacaaaatactgtagcgtgaactaaagaagctgcagccgcagtcagaaatgatgtgctcttgacatgtacagGAAATGGAGCGGTCTGCTGATGTGCTGTCTGCTGGTCTATTAGAAGTTGCAAATCCTTCTCTCTCAAGTAGATTCTTCCTAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- -cttgctg
- - - - - - gctgcag
- - - - - - - - - - - - - -ctacaaa
- - - - - - - - - - - - - - - - - - -ctgtagc
- - - - - - - - - - - - - - - - - - - - - - - -aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgatg