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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctcgctactcttcagttactaaacctactattatttttcagtctttgtaaatgttttcttacacacacacacacacacacacacacacatttttcgtatatagcttttgtttgatgacgtcttccactttccagGCATGGTTGAACTACACGTGCATGGCTCAAGACACGGACTTGTGCTCAGGCAACAAGACCTTAACCTACGACATCTACGGCCAACTCGTGCTGGCTGCAA

Basic information

species Zea mays
transcript GRMZM2G130868_T01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16925628|gb|BM078696.1|BM078696
EST:     ACGACCGACCGTGCAAGTATAGGGAGGCCACGTTTGAAAACGCGACGACA                         GCATGGTTGAACTACACGTGCATGGCTCAAGACACGGACTTGTGCTCAGGC
genomic: ACGACCGACCGTGCAAGTATAGGGAGGCCACGTTTGAAAACGCGACGACAgtaagcctcg ... cactttccagGCATGGTTGAACTACACGTGCATGGCTCAAGACACGGACTTGTGCTCAGGC
EST: gi|30088136|gb|CB886341.1|CB886341
EST:     CACGTTTGAAAACGCGACGACA                         GCATGGTTGAACTACACGTGCATGGCTCAAGACACGGACTTGTGCTCAGGC
genomic: CACGTTTGAAAACGCGACGACAgtaagcctcg ... cactttccagGCATGGTTGAACTACACGTGCATGGCTCAAGACACGGACTTGTGCTCAGGC
EST: gi|87153175|gb|DY397964.1|DY397964
EST:     ACGACCGACCGTGCAAGTATAGGGAGGCCACGTTTGAAAACGCGACGACA                         GCATGGTTGAACTACACGTGCATGGCTCAAGACACGGACTTGTGCTCAGGC
genomic: ACGACCGACCGTGCAAGTATAGGGAGGCCACGTTTGAAAACGCGACGACAgtaagcctcg ... cactttccagGCATGGTTGAACTACACGTGCATGGCTCAAGACACGGACTTGTGCTCAGGC
EST: gi|211182624|gb|FK950420.1|FK950420
EST:     ACGATAGACCGTGCAAGTATAGGGAGGCCACGTTTGAAAACGCGACGACA                         GCATGGTTGAACTACACGTGCATGGCTCAAGACACGGACTTGTGCTCAGGC
genomic: ACGACCGACCGTGCAAGTATAGGGAGGCCACGTTTGAAAACGCGACGACAgtaagcctcg ... cactttccagGCATGGTTGAACTACACGTGCATGGCTCAAGACACGGACTTGTGCTCAGGC
EST: gi|32841010|gb|CD980691.1|CD980691
EST:     ACGACCGACCGTGCAAGTATAGGGAGGCCACGTTTGAAAACGCGACGACA                         GCATGGTTGAACTACACGTGCATGGCTCAAGACACGGACTTGTGCTCAGGC
genomic: ACGACCGACCGTGCAAGTATAGGGAGGCCACGTTTGAAAACGCGACGACAgtaagcctcg ... cactttccagGCATGGTTGAACTACACGTGCATGGCTCAAGACACGGACTTGTGCTCAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacacacacatttttcgtatatagcttttgtttgatgacgtcttccactttccagGCATGGTTGAACTACACGTGCATGGCTCAAGACACGGACTTGTGCTCAGGCAACAAGACCTTAACCTACGACATCTACGGCCAACTCGTGCTGGCTGCAA
                             gtttgat  putative branch site (score: 5)
                                      cgtcttccactttcc  putative PPT
         atttttcgtatata  TA-rich tract