1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgttacaagccaatgagcccctcttttggcaaccgagtaagaattacagttgtttacaccagcagttgctgatcctcaagttctgattattttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACT
species | Zea mays |
transcript | GRMZM2G121456_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|110519563|gb|EE023896.1|EE023896
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: TCCACCCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCCGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|74237088|gb|DT645002.1|DT645002
genomic: TCAACC-TCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|78092088|gb|DV520462.1|DV520462
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|148939986|gb|EC884717.2|EC884717
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|32942454|gb|CF047273.1|CF047273
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|20208074|gb|BQ134163.1|BQ134163
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|26456147|gb|CA827730.1|CA827730
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|149088221|gb|EE177331.2|EE177331
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|101399114|gb|EB821430.1|EB821430
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GC-AATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|78111070|gb|DV529467.1|DV529467
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCATGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAGGGCGAACTTAAATGGATACCTTGEST: gi|78544613|gb|DV622111.1|DV622111
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTG
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGTTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|76919121|gb|DV167599.1|DV167599
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|71427481|gb|DR808531.1|DR808531
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|71445134|gb|DR826184.1|DR826184
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|74245787|gb|DT653701.1|DT653701
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|148939985|gb|EC884716.2|EC884716
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCCCAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|78090189|gb|DV518563.1|DV518563
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|148938546|gb|EC882867.2|EC882867
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|58029811|gb|CX725238.1|CX725238
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|101400189|gb|EB821914.1|EB821914
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|93282145|gb|EB674409.1|EB674409
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCA-GGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|76012850|gb|DT940020.1|DT940020
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|211478510|gb|FL023986.1|FL023986
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: CAACCTCTTGGAGGGGCCCAAGGACAGGNAGACTNGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|9254470|gb|BE344938.1|BE344938
genomic: CAACCTCTTGGAGGGGCCCAAGGACAGG-AGACT-GATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|148934818|gb|EC878864.2|EC878864
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCA-CCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCA-TGAGATGCEST: gi|113702266|gb|EE679770.1|EE679770
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|101399344|gb|EB821545.1|EB821545
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGATCTTAAATGGATACCTTGCATACEST: gi|71307773|gb|DR790105.1|DR790105
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCAC
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCAC
tacagttgtttacaccagcagttgctgatcctcaagttctgattattttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACT
ttctgat putative branch site (score: 3)
ttttattc putative PPT
ttctgattattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttacaagccaatgagcccctcttttggcaaccgagtaagaattacagttgtttacaccagcagttgctgatcctcaagttctgattattttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA