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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttgctcgctcacttctatacttgccatcaaaccagtcatggttttaccacctagtgatcagtactgacttgtctgttatgcgctttttcttttttgttcctgtagTTGGAGAGTCGAGCGAATCACAAGAGAGCCGTCAAACTTTGGGGTCTGCTGGTCTCTCTCTTCACTACGCTAATATCATTTCTCAGATTGACAATATT

Basic information

species Zea mays
transcript GRMZM2G113439_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113439_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g34650.1 (Oryza sativa), 3'ss of exon 4
gtaagcttgctcgctcacttctatacttgccatcaaaccagtcat--ggttttaccacctagtgatcagtactgacttgtctg---ttatgcgctttttcttttttgttcctgtagTTGGAGAGTCGAGCGAATCACAAGAGAGCCGTCAAACTTTGGGGTCTGCTGGTCTCTCTCTTCACTACGCTAATATCATTTCTCAGATTGACAATATT
||| || |  | |||||    | |      ||||||  || | ||   || |    ||| | |||| | |   ||||| ||     || ||  ||   | |||| |||   || || |  | | | ||   || |   |||||||||||| || || || || ||||| ||||| || ||||| || ||||||||||| |||||||||||    
gtatgcctagttgctcagaatttt--caatcatcaagtcactaattcagtatggttaccaactgattactttggacttctccatgcttttggtctcccttttttctgtagATGGAGCTTTACAATTGAATCAACCTTCAGAGAGCCGTCAGACGTTAGGATCAGCTGGCCTCTCGCTGCACTATGCCAATATCATTTCACAGATTGACAA----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagtgatcagtactgacttgtctgttatgcgctttttcttttttgttcctgtagTTGGAGAGTCGAGCGAATCACAAGAGAGCCGTCAAACTTTGGGGTCTGCTGGTCTCTCTCTTCACTACGCTAATATCATTTCTCAGATTGACAATATT
           tactgac  putative branch site (score: 1)
                            tgcgctttttcttttt  putative PPT
                                 tttttcttttttgtt  TA-rich tract