1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgtggtttcatctgagtggtttctgctttattcgatgacagacgatcaggttctcacattgccttgcttgttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGCCCGCAGGAAAACGGTGACAGAAAAGGATTTTCTCGATGCTGTCAACAA
species | Zea mays |
transcript | GRMZM2G110185_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGTGEST: gi|5030783|gb|AI714977.1|AI714977
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTATACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGTGEST: gi|19436439|gb|BM952849.1|BM952849
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGTGEST: gi|5740404|gb|AI948094.1|AI948094
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|12973054|gb|BG268289.1|BG268289
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|5804712|gb|AI979682.1|AI979682
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCTCGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCEST: gi|6563830|gb|AW231362.1|AW231362
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGC
EST: TTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCCCAGAAGCCGGGATGTACGCCATTCGCGEST: gi|61119189|gb|DN560150.1|DN560150
genomic: TTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|1298504|gb|W21754.1|W21754
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCC-AACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACEST: gi|4753546|gb|AI657456.1|AI657456
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTAC
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
gctttattcgatgacagacgatcaggttctcacattgccttgcttgttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGCCCGCAGGAAAACGGTGACAGAAAAGGATTTTCTCGATGCTGTCAACAA
ttctcac putative branch site (score: 2)
ttgctcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtggtttcatctgagtggtttctgctttattcgatgacagacgatcaggttctcacattgccttgcttgttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGCCCGCAGGAAAACGGTGACAGAAAAGGATTTTCTCGATGCTGTCAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG