1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agtgctgacgcagcctaactttatgctatatcattggtaagcataattgtcattgataagcatagtagctcagactgacctcctatggttcctttgctagGTTGTCTTCCGTGCAAAAGTTGGTGAACGCTATCAGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTG
species | Zea mays |
transcript | GRMZM2G079428_T04 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGTTGAAGCTGTAAAATTAACAGGGGACAATCTCATGCCAGCTGGTCAG GTTGTCTTCCGTGCAAAAGTTGGTGAACGCTATCAGCTCCCTCATAAGGGAEST: gi|61236809|gb|DN586535.1|DN586535
genomic: ATGTTGAAGCTGTAAAATTAACAGGGGACAATCTCATGCCAGCTGGTCAGgtgtgataac ... cctttgctagGTTGTCTTCCGTGCAAAAGTTGGTGAACGCTATCAGCTCCCTCATAAGGGA
EST: ATGTTGAAGCTGTAAAATTAACAGGGGACAATCTCATGCCAGCTGGTCAG GTTGTCTTCCGTGCAAAAGTTGGTGAACGCTATCAGCTCCCTCATAAGGGA
genomic: ATGTTGAAGCTGTAAAATTAACAGGGGACAATCTCATGCCAGCTGGTCAGgtgtgataac ... cctttgctagGTTGTCTTCCGTGCAAAAGTTGGTGAACGCTATCAGCTCCCTCATAAGGGA
attgtcattgataagcatagtagctcagactgacctcctatggttcctttgctagGTTGTCTTCCGTGCAAAAGTTGGTGAACGCTATCAGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTG
gactgac putative branch site (score: 2)
ttcctttgct putative PPT
attgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgctgacgcagcctaactttatgctatatcattggtaagcataattgtcattgataagcatagtagctcagactgacctcctatggttcctttgctagGTTGTCTTCCGTGCAAAAGTTGGTGAACGCTATCAGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG