1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaattgcacatccacttttcatggtattcaggtaattcccccttcctgatttgacgctagaaggctcacaatctggcattgccatctctgcatacttcagACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATGTCTGCGCCTCCGATGCAGCAGATGTCGCGTTGGTAGGTGCGAGTGAGAT
species | Zea mays |
transcript | GRMZM2G065696_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGGACGGTTTGCTCGTGCATGCAG ACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATGEST: gi|51592820|gb|CV071966.1|CV071966
genomic: CTGGACGGTTTGCTCGTGCATGCAGgtaaattgca ... catacttcagACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATG
EST: CTGGACGGTTTGCTCGTGCATGCAG ACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATGEST: gi|51592771|gb|CV071917.1|CV071917
genomic: CTGGACGGTTTGCTCGTGCATGCAGgtaaattgca ... catacttcagACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATG
EST: CTGGACGGTTTGCTCGTGCATGCAG ACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATGEST: gi|211148105|gb|FL448499.1|FL448499
genomic: CTGGACGGTTTGCTCGTGCATGCAGgtaaattgca ... catacttcagACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATG
EST: CTGGACGGTTTGCTCGTGCATGCAG ACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATGEST: gi|16918930|gb|BM073956.1|BM073956
genomic: CTGGACGGTTTGCTCGTGCATGCAGgtaaattgca ... catacttcagACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATG
EST: CTGGACGGTTTGCTCGTGCATGCAG ACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATGEST: gi|32919835|gb|CF024647.1|CF024647
genomic: CTGGACGGTTTGCTCGTGCATGCAGgtaaattgca ... catacttcagACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATG
EST: CTGGACGGTTTGCTCGTGCATGCAG ACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATGEST: gi|47961905|gb|CN844614.1|CN844614
genomic: CTGGACGGTTTGCTCGTGCATGCAGgtaaattgca ... catacttcagACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATG
EST: CTGGACGGTTTGCTCGTGCATGCAG ACGCAGCACAAGGTGGAGATGGACAAGAGGGACGACACGTTGAACACCATG
genomic: CTGGACGGTTTGCTCGTGCATGCAGgtaaattgca ... catacttcagACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATG
ctgatttgacgctagaaggctcacaatctggcattgccatctctgcatacttcagACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATGTCTGCGCCTCCGATGCAGCAGATGTCGCGTTGGTAGGTGCGAGTGAGAT
ggctcac putative branch site (score: 2)
tctctgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattgcacatccacttttcatggtattcaggtaattcccccttcctgatttgacgctagaaggctcacaatctggcattgccatctctgcatacttcagACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCACGTTGAACACCATGTCTGCGCCTCCGATGCAGCAGATGTCGCGTTGGTAGGTGCGAGTGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG