1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtataaaattacctatctttccatttgttcattctctccttgtgtcaagttttcttctaatgtgtttttgcacattttgacttccttttagtccttatttgcgatgagaacttgcctcttagctagtacttttttttggttatataatctcagcaccagaaccaatacctgtacagGTCGCTGCTGCCAAAGCAGATTTGAACTATATTGGTCTTGATGGAGAGATTGGTTGCATGGTGAATGGAGCAGGATTGGCCATGGCGACCATGGATATTA
species | Zea mays |
transcript | GRMZM2G064695_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAAAGAAATATTTGCACTGCGTGATACAACTCAGGAAGACCCCAGGGAG GTCGCTGCTGCCAAAGCAGATTTGAACTATATTGGTCTTGATGGAGAGATTEST: gi|211240437|gb|FL261944.1|FL261944
genomic: AGAAAGAAATATTTGCACTGCGTGATACAACTCAGGAAGACCCCAGGGAGgtataaaatt ... acctgtacagGTCGCTGCTGCCAAAGCAGATTTGAACTATATTGGTCTTGATGGAGAGATT
EST: AGAAAGAAATATTTGCACTGCGTGATACAACTCAGGAAGACCCCAGGGAG GTCGCTGCTGCCAAAGCAGATTTGAACTATATTGGTCTTGATGGAGAGATTEST: gi|211240439|gb|FL261946.1|FL261946
genomic: AGAAAGAAATATTTGCACTGCGTGATACAACTCAGGAAGACCCCAGGGAGgtataaaatt ... acctgtacagGTCGCTGCTGCCAAAGCAGATTTGAACTATATTGGTCTTGATGGAGAGATT
EST: AGAAAGAAATATTTGCACTGCGTGATACAACTCAGGAAGACCCCAGGGAG GTCGCTGCTGCCAAAGCAGATTTGAACTATATTGGTCTTGATGGAGAGATTEST: gi|83278581|gb|DV942589.1|DV942589
genomic: AGAAAGAAATATTTGCACTGCGTGATACAACTCAGGAAGACCCCAGGGAGgtataaaatt ... acctgtacagGTCGCTGCTGCCAAAGCAGATTTGAACTATATTGGTCTTGATGGAGAGATT
EST: AGAAAGAAATATTTGCACTGCGTGATACAACTCAGGAAGACCCCAGGGAG GTCGCTGCTGCCAAAGCAGATTTGAACTATATTGGTCTTGATGGAGAGATTEST: gi|60354613|gb|DN221586.1|DN221586
genomic: AGAAAGAAATATTTGCACTGCGTGATACAACTCAGGAAGACCCCAGGGAGgtataaaatt ... acctgtacagGTCGCTGCTGCCAAAGCAGATTTGAACTATATTGGTCTTGATGGAGAGATT
EST: AGAAAGAAATATTTGCACTGCGTGATACAACTCAGGAAGACCCCAGGGAG GTCGCTGCTGCCAAAGCAGATTTGAACTATATTGGTCTTGATGGAGAGATT
genomic: AGAAAGAAATATTTGCACTGCGTGATACAACTCAGGAAGACCCCAGGGAGgtataaaatt ... acctgtacagGTCGCTGCTGCCAAAGCAGATTTGAACTATATTGGTCTTGATGGAGAGATT
gctagtacttttttttggttatataatctcagcaccagaaccaatacctgtacagGTCGCTGCTGCCAAAGCAGATTTGAACTATATTGGTCTTGATGGAGAGATTGGTTGCATGGTGAATGGAGCAGGATTGGCCATGGCGACCATGGATATTA
tacttttttttggtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaaattacctatctttccatttgttcattctctccttgtgtcaagttttcttctaatgtgtttttgcacattttgacttccttttagtccttatttgcgatgagaacttgcctcttagctagtacttttttttggttatataatctcagcaccagaaccaatacctgtacagGTCGCTGCTGCCAAAGCAGATTTGAACTATATTGGTCTTGATGGAGAGATTGGTTGCATGGTGAATGGAGCAGGATTGGCCATGGCGACCATGGATATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA