1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtggggtccacttttttgtttaacaaacacacatgtgctgaactcttcgctgagtatagtagttgcctagttatattgggagtataactctcatgtctgtgcatgacagTGGGGTGGATCGCTTCAGGCGCCAATTTGCTCATTTGGAAGAAGGTACTGCAAAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCA
species | Zea mays |
transcript | GRMZM2G062761_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACCTTCATGTATCCAAG TGGGGTGGATCGCTTCAGGCGTCAATTTGCTCATTTGGAAGAAGGTACTGCEST: gi|71326217|gb|DR799803.1|DR799803
genomic: ACCTTCATGTATCCAAGgtggggtcca ... tgcatgacagTGGGGTGGATCGCTTCAGGCGCCAATTTGCTCATTTGGAAGAAGGTACTGC
EST: GAATACCTACAAGGAGCAGACCACAATCAGATGACCTTCATGTATCCAAG TGGGGTGGATCGCTTCAGGCGCCAATTTGCTCATTTGGAAGAAGGTACTGCEST: gi|71430391|gb|DR811441.1|DR811441
genomic: GAATACCTACAAGGAGCAGACCACAATCAGATGACCTTCATGTATCCAAGgtggggtcca ... tgcatgacagTGGGGTGGATCGCTTCAGGCGCCAATTTGCTCATTTGGAAGAAGGTACTGC
EST: GAATACCTACAAGGAGCAGACCACAATCAGATGACCTTCATGTATCCAAG TGGGGTGGATCGCTTCAGGCGCCAATTTGCTCATTTGGAAGAAGGTACTGC
genomic: GAATACCTACAAGGAGCAGACCACAATCAGATGACCTTCATGTATCCAAGgtggggtcca ... tgcatgacagTGGGGTGGATCGCTTCAGGCGCCAATTTGCTCATTTGGAAGAAGGTACTGC
tatagtagttgcctagttatattgggagtataactctcatgtctgtgcatgacagTGGGGTGGATCGCTTCAGGCGCCAATTTGCTCATTTGGAAGAAGGTACTGCAAAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCA
gtataac putative branch site (score: 3)
tagttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggggtccacttttttgtttaacaaacacacatgtgctgaactcttcgctgagtatagtagttgcctagttatattgggagtataactctcatgtctgtgcatgacagTGGGGTGGATCGCTTCAGGCGCCAATTTGCTCATTTGGAAGAAGGTACTGCAAAGGGTGAAAAACACAGTCCACAGCTGCGACAGAATGTTTCTTTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC