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gtattatcactggttctgttaattaactacatgacaaaattgttgtgtttacttcctactgatttgcactttttgttgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
species | Zea mays |
transcript | GRMZM2G044011_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCCCTGCAATTGCTGGCTACGAGACG GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAAEST: gi|67024357|gb|CO453106.1|CO453106
genomic: GCCCTGCAATTGCTGGCTACGAGACGgtattatcac ... tgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
EST: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACG GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAAEST: gi|71763506|gb|DR961443.1|DR961443
genomic: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcac ... tgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
EST: AAACATCAATCCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACG GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAAEST: gi|71442136|gb|DR823186.1|DR823186
genomic: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcac ... tgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
EST: AAACATCAATTCCTAGAAAGCATGGCCCTGCAATTGCTGACTACGAGACG GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAAEST: gi|32825337|gb|CD965059.1|CD965059
genomic: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcac ... tgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
EST: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACG GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAAEST: gi|76016282|gb|DT943452.1|DT943452
genomic: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcac ... tgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
EST: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACG GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAAEST: gi|89251335|gb|DY623121.1|DY623121
genomic: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcac ... tgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
EST: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACG GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
genomic: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcac ... tgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
tgacaaaattgttgtgtttacttcctactgatttgcactttttgttgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
tactgat putative branch site (score: 2)
ctttttgttgttct putative PPT
aaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattatcactggttctgttaattaactacatgacaaaattgttgtgtttacttcctactgatttgcactttttgttgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT