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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtcttagagctccagcttttttaaatgtgtttaatccttatttattatgttaaacactaaagtgacaacttggtattgtagGGTTTAGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAA

Basic information

species Zea mays
transcript GRMZM2G036290_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036290_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g01710.2 (Oryza sativa), 3'ss of exon 8
gtgtcttagagctccagcttttttaaatgtgtttaatccttatttattatgttaaacactaaagtgacaacttggtat-tgtagGGTTTAGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAA
|||| ||  ||    | ||||   || | |  | |   | | ||     | ||   ||||||| |||  ||||| |   |  ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
gtgt-ttgcagta--aactttcagaattttactgaggtcatgttggcagtatttg-cactaaaatgatcacttgattcatacagGGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATACGATGACATTGAAATTGTGATCCACCCACAATCTATCATACACTCTATGATTGAAA

upper sequence: GRMZM2G036290_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA17G09740.1 (Glycine max), 3'ss of exon 8
----------------------gtgtcttagagctc--cagctttttta--aatgtgtttaatccttatttattatgttaaacactaaagtgacaacttggtat-------tgtagGGTTTAGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAA
                         | || ||       ||| ||||||  ||| ||||||||  |    ||| |  ||     ||| |  |  || ||  |||          ||||| ||||||| ||||| |||||||| || ||||| ||||| |||||| | ||||||||||| ||||| |||||||| |||||||| || ||| ||||||
gtttgtttctttttttatgtcaacatattggacgcaaatagcctttttataaatctgtttaattatgtggtatgaatttcctagctataaggtaaatttcttatacttcttcacagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCTGACTATGATCATATTGAGATTGTCATTCATCCACAATCAATCATACATTCAATGATTGAAA

upper sequence: GRMZM2G036290_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA05G02190.1 (Glycine max), 3'ss of exon 8
---------------------gtgtcttagagctccagc--ttttttaaatgtgtttaatccttatttattatgttaaacactaaagtgacaacttggtat-------tgtagGGTTTAGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAA
                      | |   |       |||  |||| ||||| ||||||||  |    ||| |  ||     ||| |  |  || ||  | |          ||||| ||||||| ||||| |||||||| || ||||| ||||| || ||| | ||||||||||| ||||| |||||||| |||||||| || ||| ||||||
gtttgcttctttttttatgtcatattgaatgaaaagagccattttataaatctgtttaattatgtggtatgaatttcctagctataaggtaaatttcttctgcttcttcacagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCTGACTACGATCATATTGAGATTGTCATTCATCCACAATCAATCATACATTCAATGATTGAAA

upper sequence: GRMZM2G036290_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv17s0000g08390.t01 (Vitis vinifera), 3'ss of exon 8
----------------gtgtcttagagctccagctttttta--aatgtgttta-atccttatttattatgttaaacactaaagtgacaacttggtatt--------gtagGGTTTAGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAA
                ||||||     ||  |     |  |  ||| |||  |      || | | |||| |      |  |   |  || | || ||          ||||||||||||||||||| ||||| ||| | ||||| |||||||||||||| ||||||||  | ||||| ||||||||||||||||| |||||||| ||||
gtttgtcccttttttggtgtctctattcttgattacatgcaccaatatgtgaatgaatctactcactatggtctgagttgcaacaaataccttgttttcctttttgacagGGTTTAGAAGTTATTGAAGCACACTATCTGTTTGGGGCTGAATATGATGATATTGAGATCATAATTCATCCACAATCTATCATACATTCTATGGTCGAAA

upper sequence: GRMZM2G036290_T01 (Zea mays), 3'ss of exon 8
lower sequence: EFJ07179 (Selaginella moellendorffii), 3'ss of exon 9
gtgtcttagagctccagcttttttaaatgtgtttaatccttatttattatgttaaacactaaagtgacaacttggtattgtagGGTTTAGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAA
                                | ||     |||| |    ||     || || | ||| |||    | | ||||  | || || ||||| || || ||||| ||||| ||||| |||||||||||||| ||||| || || || ||||| || |||||||| ||| | || |
-------------------------------gtaaaaaaacatttttatacttgtctgctgaactaacatcttctgctggcagGGACTCGAGGTCATTGAAGCTCACTATTTGTTTGGAGCTGACTATGATGACATTGACATTGTTATCCATCCCCAATCCATTATACACTCCATGATCGAGA

upper sequence: GRMZM2G036290_T01 (Zea mays), 3'ss of exon 8
lower sequence: EFJ09183 (Selaginella moellendorffii), 3'ss of exon 9
gtgtcttagagctccagcttttttaaatgtgtttaatccttatttattatgttaaacactaaagtgacaacttggtattgtagGGTTTAGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAA
                                | ||     |||| |    ||     || || | ||| |||    | | ||||  | || || ||||| || || ||||| ||||| ||||| |||||||||||||| ||||| || || || ||||| || |||||||| ||| | || |
-------------------------------gtaaaaaaacatttttatacttgtctgctgaactaacatcttctgctggcagGGACTCGAGGTCATTGAAGCTCACTATTTGTTTGGAGCTGACTATGATGACATTGACATTGTTATCCATCCCCAATCGATTATACACTCCATGATCGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtttaatccttatttattatgttaaacactaaagtgacaacttggtattgtagGGTTTAGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAA
                            cactaaa  putative branch site (score: 2)
           ttatttattatgttaa  TA-rich tract