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...tgacctgagtctgattaccattccctgctttgcattgctttgcattttgtgttgcaccctgtttttctctgatgcttacaagttaatatgttcaatgcagGCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGCCAGGAGTGCAAGACTGTTGTTTCTCAATATGGACAGCAGATCCTAGATC
species | Zea mays |
transcript | GRMZM2G035636_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCTGTGCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACA GCCATAATTACTGAAATCAATGAAAAAATTGGTGCTGCTGGTGTAGTCAGCEST: gi|32835904|gb|CD975582.1|CD975582
genomic: GCTGTGCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACAataagttttg ... ttcaatgcagGCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGC
EST: GCTGTGCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACA GCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGCEST: gi|33092153|gb|CF052147.1|CF052147
genomic: GCTGTGCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACAataagttttg ... ttcaatgcagGCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGC
EST: GCTGTGCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACA GCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGCEST: gi|32850207|gb|CD989888.1|CD989888
genomic: GCTGTGCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACAataagttttg ... ttcaatgcagGCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGC
EST: AGATTCTGGAACTTCCTTGCTTGCTGGCCCCACA GCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGCEST: gi|32850559|gb|CD990240.1|CD990240
genomic: AGATTCTGGAACTTCCTTGCTTGCTGGCCCCACAataagttttg ... ttcaatgcagGCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGC
EST: ATTCTGGAACTTCCTTGCTTGCTGGCNCCC-CA GCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGEST: gi|194716945|gb|FK934104.1|FK934104
genomic: ATTCTGGAACTTCCTTGCTTGCTGGC-CCCACAataagttttg ... ttcaatgcagGCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAG
EST: ATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACA GCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGCEST: gi|7135183|gb|AW497972.1|AW497972
genomic: ATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACAataagttttg ... ttcaatgcagGCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGC
EST: GCTGTGCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACA GCCATAATTACTGAAATCAATGAAAAAATTGGTGCTGCTGGTGTAGTCAGCEST: gi|32850704|gb|CD990385.1|CD990385
genomic: GCTGTGCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACAataagttttg ... ttcaatgcagGCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGC
EST: GCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCNCCACA GCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGC
genomic: GCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACAataagttttg ... ttcaatgcagGCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGC
tttgtgttgcaccctgtttttctctgatgcttacaagttaatatgttcaatgcagGCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGCCAGGAGTGCAAGACTGTTGTTTCTCAATATGGACAGCAGATCCTAGATC
ttacaagttaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacctgagtctgattaccattccctgctttgcattgctttgcattttgtgttgcaccctgtttttctctgatgcttacaagttaatatgttcaatgcagGCCATAATTACTGAAATCAATGAAAAGATTGGTGCTGCTGGTGTAGTCAGCCAGGAGTGCAAGACTGTTGTTTCTCAATATGGACAGCAGATCCTAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
tgacctg
- - - - - - - - - - - -cctgctt
- - - - - - - - - - - - - - -ttgcatt
- - - - - - - - - - - - - - - tgcattg
- - - - - - - - - - - - - - - - - - - - - - - -tgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttac