1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctctagttgtcttgtggcatagttttccttcatggcctttattgtagttacaaactcactaacaggtgcatctccttgtgatgttttgctattcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACAATCTGGCCTGGTGTCACAAAAATGCCTTGGTACAACAACTTCAAGCCTC
species | Zea mays |
transcript | GRMZM2G019267_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAG CCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACAEST: gi|93282558|gb|EB674822.1|EB674822
genomic: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAGgtagattttt ... attcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACA
EST: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAG CCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACAEST: gi|149107723|gb|EE189597.2|EE189597
genomic: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAGgtagattttt ... attcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACA
EST: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAG CCAGAGCAGCTGACTAAGATCTTCCAGCTTTGTGGTACCCCEST: gi|149099519|gb|EE185557.2|EE185557
genomic: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAGgtagattttt ... attcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCC
EST: TTTTTGCAGAACTTCTCAATGGGGAGCCAATATTGCCTGNAAAGAATGAG CCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGEST: gi|32844191|gb|CD983872.1|CD983872
genomic: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAGgtagattttt ... attcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATG
EST: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAG CCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTAEST: gi|148969561|gb|EE020392.2|EE020392
genomic: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAGgtagattttt ... attcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTA
EST: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAG CCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACAEST: gi|211325352|gb|FL255515.1|FL255515
genomic: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAGgtagattttt ... attcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACA
EST: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAG CCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACAEST: gi|32845306|gb|CD984987.1|CD984987
genomic: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAGgtagattttt ... attcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACA
EST: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAG CCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTAEST: gi|149106097|gb|EE291761.2|EE291761
genomic: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAGgtagattttt ... attcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTA
EST: TTTTTGCAGAACTTCTCAATGGGGAGCCAATATTGCCTGGAAAGAATGAG CCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACC
genomic: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAGgtagattttt ... attcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACA
agttacaaactcactaacaggtgcatctccttgtgatgttttgctattcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACAATCTGGCCTGGTGTCACAAAAATGCCTTGGTACAACAACTTCAAGCCTC
cactaac putative branch site (score: 277)
ctattcct putative PPT
atgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctagttgtcttgtggcatagttttccttcatggcctttattgtagttacaaactcactaacaggtgcatctccttgtgatgttttgctattcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACAATCTGGCCTGGTGTCACAAAAATGCCTTGGTACAACAACTTCAAGCCTC
- - - - - - - - - - - - - -cttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - -aaactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtt