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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagcccacgaataatccgaagcatgctgggtgattcagcgcttcggcaatcagcaccatcatctaacgtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG

Basic information

species Zea mays
transcript GRMZM2G004528_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g09250.1 (Oryza sativa), 3'ss of exon 8
---------gtaagagcccacgaataatccgaagcatgctgg---gtgatt--cagcgcttcggcaatcagcacc-atcat-ctaacgtctctctcattat-----gcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG
          | |  | |   ||  |||        |||||    |  |||  || |  ||  || | ||  |   |  ||  |   || || ||  ||||     |||||| |||||||| |||||||| || ||||| |||||||| |||||||||||||||||||| || 
gtaagagttctgatggactgagatcaattgactctctgctgctctgcaattgccaccctttttgccagcaaaattgactatgttgttgtttcacttgttatcctgtgcagGAGAAGTTCCATTCCTTCCATCCAGTGGCTACCATCCTGAGCTACCTCACCAAGGCACCCCTT

upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 8
---------gtaagagcccacgaataatccgaagcatgctgg---gtgatt--cagcgcttcggcaatcagcacc-atcat-ctaacgtctctctcattat-----gcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG--------------------
          | |  | |   ||  |||        |||||    |  |||  || |  ||  || | ||  |   |  ||  |   || || ||  ||||     |||||| |||||||| |||||||| || ||||| |||||||| |||||||||||||||||||| ||                     
gtaagagttctgatggactgagatcaattgactctctgctgctctgcaattgccaccctttttgccagcaaaattgactatgttgttgtttcacttgttatcctgtgcagGAGAAGTTCCATTCCTTCCATCCAGTGGCTACCATCCTGAGCTACCTCACCAAGGCACCCCTTGTGAGTGCATACATGCATCT

upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA08G14670.1 (Glycine max), 3'ss of exon 8
-----gtaagagcccacgaataatccgaagcatgctgggtgattcagcgcttcggcaatcagcaccatcatctaacgtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG-------------------------------------
       |   |      ||  || |    ||  ||   |  |||    |||  |   |    |   |||  | | || | |  | |||  ||||  ||||||||||| |||||||| || || |||||||| || ||||| |||||||| || |||                                     
gtttgccatatgttgcttaaccattcattccaacct--ctatttcttatctttagttttttaaagactcaaatga-gtttatggcttta-acagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGGTAAGTATAATGTATCTGATTCATAATTGTTCAGTGA

upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA08G14670.2 (Glycine max), 3'ss of exon 8
-----gtaagagcccacgaataatccgaagcatgctgggtgattcagcgcttcggcaatcagcaccatcatctaacgtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG
       |   |      ||  || |    ||  ||   |  |||    |||  |   |    |   |||  | | || | |  | |||  ||||  ||||||||||| |||||||| || || |||||||| || ||||| |||||||| || |||
gtttgccatatgttgcttaaccattcattccaacct--ctatttcttatctttagttttttaaagactcaaatga-gtttatggcttta-acagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG

upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 5
---------gtaagagcccacgaataatccgaagcatgctgggtgattcagcgcttcggcaatcagcaccatcatctaacgtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG
          ||   |      ||| || |    || |||   |   | |    ||  |   |    |   |||  | | || | |  | | |  ||||  || |||||||| |||||||| || || ||||||||||| ||||| |||||||| || |||
gtttgtcatatatatgttgcttaatcattcattccaagctctatctcttat--ttttagttttttaaagactcaaatga-gtttatggcttca-acagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTG

upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA05G31450.3 (Glycine max), 3'ss of exon 8
---------gtaagagcccacgaataatccgaagcatgctgggtgattcagcgcttcggcaatcagcaccatcatctaacgtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG----
          ||   |      ||| || |    || |||   |   | |    ||  |   |    |   |||  | | || | |  | | |  ||||  || |||||||| |||||||| || || ||||||||||| ||||| |||||||| || |||    
gtttgtcatatatatgttgcttaatcattcattccaagctctatctcttat--ttttagttttttaaagactcaaatga-gtttatggcttca-acagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGGTAA

upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 8
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagagcccacgaataatccgaagcatgctgggtgattcagcgcttcggcaatcagcaccatcatctaacgtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG-------------------------------------
      | |     | | | |     ||  |||||   || |   |     || |       | || |   |   |     ||  |||||  ||||| ||||| ||||| || ||||||||||| || |||||||||||||||||||||||                                      
--gttcgtcagttcacagtacatgttattttgggtt-ctctgttttcactgaaccgcggttttgatgttttgaaacatctttttggcagGGAAAGTTTCACTCTTTCCATCCTGTGGCCACCATACTCAGCTACCTCACCAAGGCACCACTTGTACCGCCGGGAACTCCGGTGATTAACGCACTGTCGA

upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 8
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
gtaagagcccacgaataatccgaagcatgctgggtgattcagcgcttcggcaatcagcaccatcatctaacgtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG
||  |    |      |  |  | |    |    || ||  |   ||   ||         || ||  |  |  | |   ||| ||||||||||||| || ||||||||||| || ||||||||||| || |||||||||||||| || |||
gtctgttttcttctgcatccttatgggaccctcttgctttggt-ttttaccatcacatggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG

upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 8
lower sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 7
---------------------------gtaagagcccacgaat-aatccgaagcatg---ctgggtgattcag---cgcttcggcaatcagcaccatcatctaacgtct-ctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG-------------------------------------
                            ||  |  |    ||| ||||  ||| ||    ||   || ||||      ||| ||   |  | |  |   |  | ||  | || ||||  ||||||| |||||||| || ||||||||||| |||    |||| ||||||||||||||||| ||  ||                                     
gtaatctacaatctccaaatctctcttatattattctgttaatcaatcgcaaggattaacctctttggttcacattttctttggtttttggaattaaattgaatcgggtactttcatgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACCAAGGCTCCCTTGGTACCCCCAGGTACCCCAGTGGTTAACGCGTTGGCTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13388668|gb|BG462341.1|BG462341
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|32856301|gb|CD995982.1|CD995982
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGCTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTAC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTAC
EST: gi|6022235|gb|AW067163.1|AW067163
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|6021982|gb|AW066910.1|AW066910
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCNCCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|110941538|gb|EE161695.1|EE161695
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|110217273|gb|EC899171.1|EC899171
EST:     TGCTCCTGGCTGAGGTCAGCCCCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCTTTCCACCCGGTGGCCACCATCCTTAGGTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|13388670|gb|BG462342.1|BG462342
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|6022029|gb|AW066957.1|AW066957
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|6022307|gb|AW067235.1|AW067235
EST:     TGCTCCTGGCTGAGCTCAGCNCCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|6637095|gb|AW261367.1|AW261367
EST:     TGCTCCTGGCTGAGCTCAGCACCACGATCCAGCTAAAACCGGAGGGAACG                         GACAAGTTCCACTCCT
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCT
EST: gi|6021766|gb|AW066694.1|AW066694
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|71756431|gb|DR954368.1|DR954368
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|91871596|gb|EB401553.1|EB401553
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|71771141|gb|DR969078.1|DR969078
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|6022274|gb|AW067202.1|AW067202
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|6022096|gb|AW067024.1|AW067024
EST:     TGCTCCTGGCTGAGCTCAGCCCCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|32854168|gb|CD993849.1|CD993849
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGCTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|149071426|gb|EE159821.2|EE159821
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|13515776|gb|BG518052.1|BG518052
EST:     GAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: GAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|13515973|gb|BG518249.1|BG518249
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|60397539|gb|DN230355.1|DN230355
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|148952105|gb|EC897897.2|EC897897
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|21621348|gb|BQ619354.1|BQ619354
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|6021614|gb|AW066542.1|AW066542
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|32854394|gb|CD994075.1|CD994075
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGCTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|148928580|gb|EC873008.2|EC873008
EST:     TGCTCCTGGCTGAGCTCAGCCCCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
EST: gi|148936902|gb|EC881051.2|EC881051
EST:     TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACG                         GACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC
genomic: TGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagccc ... cattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattcagcgcttcggcaatcagcaccatcatctaacgtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG
                              atctaac  putative branch site (score: 2)
                                      tctctctcatt  CT-rich tract
                                            tcattat  TA-rich tract