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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaacacaaaacttctgccgataaatgagatgtacttagcaattaagcatgcatgcatggtatttctatcggtttctaatggattttgatataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGCTGAGGAGGAAGAATAAGTTTTTGATTTGGAGAACGGCCGAATGCTGGCC

Basic information

species Zea mays
transcript GRMZM5G877316_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G877316_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os11g21990.1 (Oryza sativa), 3'ss of exon 7
gtaacaacacaaaacttctgccgataa-atgagatgtacttagcaattaagcatgcatgcatggtatttctatcggtttctaatggattttgatataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGCTGAGGAGGAAGAATAAGTTTTTGATTTGGAGAACGGCCGAATGC-TGGCC
 | | |   |||  |    |  ||||| ||  | |  |  |||   ||    | |  |   |  | |||  | | | |  ||||   ||    | ||||| ||||||||||||||| ||||| ||||| || ||||| |||||||| |||||||| |||||||| |||||| |  |     |||||   |  ||||||  | |  
tttagattgcaat-cactagtggataatatttgtttcatgtagatgttgtaga-gtttcagttatgtttgaaactgcta-taatat-ttgcattttaatgtcagGCAATCTTTCGTCAAAGCACTGGAACCTTTTGTTAAATGGCTGGAGGAGGCCGAGGAGGAGGAATAAATGGTGCTACTGGAGGCTGTGCGAATGTATTGT-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166454118|gb|EG300254.1|EG300254
EST:     CTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: CTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60359653|gb|DN226626.1|DN226626
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|78108788|gb|DV527205.1|DV527205
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60348203|gb|DN215176.1|DN215176
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAA
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAA
EST: gi|166599301|gb|EG272951.1|EG272951
EST:     CTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: CTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|91873013|gb|EB402970.1|EB402970
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAAGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|91051544|gb|EB161962.1|EB161962
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|21809907|gb|BQ668225.1|BQ668225
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60352644|gb|DN219617.1|DN219617
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60356466|gb|DN223439.1|DN223439
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTT-GTCAAATG
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATG
EST: gi|60395427|gb|DN228297.1|DN228297
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTT-GTCAAATGG
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGG
EST: gi|211121227|gb|FL444928.1|FL444928
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60398268|gb|DN231084.1|DN231084
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCCATCTTTCGTGAAAGCTCTGGAG
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAG
EST: gi|60396749|gb|DN229613.1|DN229613
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60345402|gb|DN212375.1|DN212375
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTT-GTCAA
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAA
EST: gi|116829286|gb|EC866340.1|EC866340
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTATGTCAAATGGCTCG
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCG
EST: gi|60397626|gb|DN230442.1|DN230442
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTT-GTCAA
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAA
EST: gi|78544691|gb|DV622189.1|DV622189
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60352735|gb|DN219708.1|DN219708
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAA
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAA
EST: gi|9254986|gb|BE345454.1|BE345454
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60340817|gb|DN207790.1|DN207790
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60401017|gb|DN233824.1|DN233824
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|5525417|gb|AI861310.1|AI861310
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60394003|gb|DN226873.1|DN226873
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|21760202|gb|BQ635743.1|BQ635743
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|76935235|gb|DV174253.1|DV174253
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|5714271|gb|AI944256.1|AI944256
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|22490940|gb|BU050863.1|BU050863
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60350223|gb|DN217196.1|DN217196
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|21809523|gb|BQ667841.1|BQ667841
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCGATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60342918|gb|DN209891.1|DN209891
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTT-GTCAAATG
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATG
EST: gi|60349190|gb|DN216163.1|DN216163
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGT
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGT
EST: gi|22543087|gb|BU093525.1|BU093525
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|32832748|gb|CD972426.1|CD972426
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|61117471|gb|DN558432.1|DN558432
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGG
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGG
EST: gi|32803373|gb|CD955609.1|CD955609
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60359300|gb|DN226273.1|DN226273
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTT-GTCAAATG
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATG
EST: gi|50331627|gb|CO526753.1|CO526753
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTTGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|213170637|gb|FM183951.1|FM183951
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|37373934|gb|CF623291.1|CF623291
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60347041|gb|DN214014.1|DN214014
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|5525704|gb|AI861597.1|AI861597
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|5124270|gb|AI746006.1|AI746006
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60397486|gb|DN230302.1|DN230302
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAA
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAA
EST: gi|40302771|gb|CK347158.1|CK347158
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|29576781|gb|CB616893.1|CB616893
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60394809|gb|DN227679.1|DN227679
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTT-GTCAAATG
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATG
EST: gi|5713727|gb|AI943719.1|AI943719
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|61117478|gb|DN558439.1|DN558439
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGG
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGG
EST: gi|76912268|gb|DV164647.1|DV164647
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|211134645|gb|FL028666.1|FL028666
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
EST: gi|60395035|gb|DN227904.1|DN227904
EST:     GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAG                         GCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC
genomic: GAAGATACTGTCCTGCTTTGGTTCCGTAAAGGTTCAAACCAGAAGGGCAGgtaacaacac ... ataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcatgcatgcatggtatttctatcggtttctaatggattttgatataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGCTGAGGAGGAAGAATAAGTTTTTGATTTGGAGAACGGCCGAATGCTGGCC
                                     attttgatataatga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtaacaacacaaaacttctgccgataaatgagatgtacttagcaattaagcatgcatgcatggtatttctatcggtttctaatggattttgatataatgacagGCAATCTTTCGTGAAAGCTCTGGAGCCGTTTGTCAAATGGCTCGAGGAGGCTGAGGAGGAAGAATAAGTTTTTGATTTGGAGAACGGCCGAATGCTGGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG