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...ttggactcttgttttttctttatgtttaatgtagattacctttgtttggatgatgcataattcatcaaatgtaatgccaatcttatctatcaacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCTTGGCCTTGAAGTTATTGCAAGGATTACAGGGTATGCTGATGCTGCACAG
species | Zea mays |
transcript | GRMZM5G860137_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAGAGCCAAGAATCTEST: gi|71426142|gb|DR807192.1|DR807192
genomic: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: ACTTTTAAGACGAAGGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCTEST: gi|93281947|gb|EB674211.1|EB674211
genomic: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: TGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCTEST: gi|149110542|gb|EE294180.2|EE294180
genomic: TGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCTEST: gi|110202377|gb|EC884274.1|EC884274
genomic: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: TGGCAATTTC-TCTAGTATAAG TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCTEST: gi|71298332|gb|DR785147.1|DR785147
genomic: TGGCAA-TTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAGAGCCAAGAATCTEST: gi|6994169|gb|AW453383.1|AW453383
genomic: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAGAGCCAAGAATCTEST: gi|12047245|gb|BF729384.1|BF729384
genomic: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAGAGCCAAGAATCTEST: gi|110939957|gb|EE160114.1|EE160114
genomic: ACTTTTAAGACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
EST: GACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAG TGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
genomic: GACGAATGGTTCTGTAACGGCTGGCAATTCTTCTAGTATAAGgtttgtttcc ... caacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCT
ttggatgatgcataattcatcaaatgtaatgccaatcttatctatcaacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCTTGGCCTTGAAGTTATTGCAAGGATTACAGGGTATGCTGATGCTGCACAG
ataattcatcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggactcttgttttttctttatgtttaatgtagattacctttgtttggatgatgcataattcatcaaatgtaatgccaatcttatctatcaacacacagTGATGGCGCTGCTGCAATTGTCCTTGTCAGTGGAGAGAAAGCCAAGAATCTTGGCCTTGAAGTTATTGCAAGGATTACAGGGTATGCTGATGCTGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC