1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgtgtataaatatttacagatgaagtacaactcagacaaagttgatgagatatatggtacttctagAGATTCAAAGACATGGAGCACTGGGGGAATCGAAGGTGTGCACCGCTTCCTTGGACGAACGTGGAGACTCATAGTTGGTCCACAATTATCTGATGGATCA
species | Zea mays |
transcript | GRMZM2G566786_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATGGCGCTGATTCTCTTCGCTTGTACGAAATGTTCATGGGGCCATTGAG AGATTCAAAGACATGGAGCACTGGGGGAATCGAAGGTGTGCACCGCTTTCTEST: gi|211179945|gb|FL164668.1|FL164668
genomic: TATGGCGCTGATTCTCTTCGCTTGTACGAAATGTTCATGGGGCCATTGAGgtgtgtataa ... gtacttctagAGATTCAAAGACATGGAGCACTGGGGGAATCGAAGGTGTGCACCGCTTCCT
EST: TATGGCGCTGATTCTCTTCGCTTGTACGAAATGTTCATGGGGCCATTGAG AGATTCAAAGACATGGAGCACTGGGGGAATCGAAGGTGTGCACCGCTTCCTEST: gi|26456635|gb|CA828218.1|CA828218
genomic: TATGGCGCTGATTCTCTTCGCTTGTACGAAATGTTCATGGGGCCATTGAGgtgtgtataa ... gtacttctagAGATTCAAAGACATGGAGCACTGGGGGAATCGAAGGTGTGCACCGCTTCCT
EST: TATGGCGCTGATTCTCTTCGCTTGTACGAAATGTTCATGGGGCCATTGAG AGATTCAAAGACATGGAGCACTGGGGGAATCGAAGGTGTGCACCGCTTCCT
genomic: TATGGCGCTGATTCTCTTCGCTTGTACGAAATGTTCATGGGGCCATTGAGgtgtgtataa ... gtacttctagAGATTCAAAGACATGGAGCACTGGGGGAATCGAAGGTGTGCACCGCTTCCT
atttacagatgaagtacaactcagacaaagttgatgagatatatggtacttctagAGATTCAAAGACATGGAGCACTGGGGGAATCGAAGGTGTGCACCGCTTCCTTGGACGAACGTGGAGACTCATAGTTGGTCCACAATTATCTGATGGATCA
agttgat putative branch site (score: 5)
tacttct putative PPT
agatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtataaatatttacagatgaagtacaactcagacaaagttgatgagatatatggtacttctagAGATTCAAAGACATGGAGCACTGGGGGAATCGAAGGTGTGCACCGCTTCCTTGGACGAACGTGGAGACTCATAGTTGGTCCACAATTATCTGATGGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA