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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatctattcacatttgatttaggagatgtaaacaattaagcttatttcagcagcacatctgcaaaactttcatgatactgtatattctttgtgatcgcagGTTGAGTTTATACCAAAATTCAGTGTAAGCGGGATATGGCAGAGATGGCGAGAATCATATCCCAACGATGCGAGTAAAAGTACAGAGGCCATTACAGTAT

Basic information

species Zea mays
transcript GRMZM2G460078_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G460078_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g55590.1 (Oryza sativa), 3'ss of exon 7
-----------gatctattcacatttgatttaggagatgtaaacaattaagcttatttcagcagcacatctgcaaaactttcatgatactgtatattctttgtgatcgcagGTTGAGTTTATACCAAAATTCAGTGTAAGCGGGATATGGCAGAGATGGCGAGAATCATATCCCAACGATGCGAGTAAAAGTACAGAGGCCATTACAGTAT
            |    || |  |||| ||||||||    | |||||  | ||| | |||     | || |      ||| |||| || | |||||||| || | | |||||||||||| || || ||||| ||||| || || ||||||||||| ||||| || |||||||||||| |||  ||||||| |   || || ||||||||||
atgtgttactttaagcctttaattttgttttaggagtcacatacaatgcatcttgtgtca-----aaattt------cttccatgctaatatatattctctgaggttgcagGTTGAGTTCATGCCGAAATTTAGTGTGAGGGGAATATGGCAGAGGTGGCGTGAGTCATATCCCAACAATGGCAGTAAAAATGATGAAGCAATTACAGTAT

upper sequence: GRMZM2G460078_T03 (Zea mays), 3'ss of exon 7
lower sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 7
gatctattcacatttgatttaggagatgtaaacaattaagcttattt--cagcagcacatctgcaaaactttcatgatactgtatattctttgtgatcgcagGTTGAGTTTATACCAAAATTCAGTGTAAGCGGGATATGGCAGAGATGGCGAGAATCATATCCCAACGATGCGAGTAAAAGTACAGAGGCCATTACAGTAT
    | ||  ||| |   || |   || ||  | |  | |||| ||    |     |  || |   || | |   | |    ||||||  || | || | ||||||||||||| || || |||||||| || || || |||||||||||||| |||||| |||| || ||||  | |||   |   || || || || || |
-tcattttttcatctagatt-gctcatttactctacaaggcttgttcactaatctaagttcagtttaattatttggttgtaatatatttatttttattgaagGTTGAGTTTATGCCCAAGTTCAGTGTGAGAGGAATCTGGCAGAGATGGCGTGAATCACATCCTAAAGATGGAACTAAGGTTGATGATGCTATAACCGTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14529467|gb|BI096600.1|BI096600
EST:     TGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAGTG                         GTTGAGTTTATACCAAAATTCAGTGTAAGCGGGATATGGCAGAGATGGCGA
genomic: TGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAGTGgtaatttatc ... gtgatcgcagGTTGAGTTTATACCAAAATTCAGTGTAAGCGGGATATGGCAGAGATGGCGA
EST: gi|93012882|gb|EB638402.1|EB638402
EST:     TGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAGTG                         GTTGAGTTTATACCAAAATTC
genomic: TGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAGTGgtaatttatc ... gtgatcgcagGTTGAGTTTATACCAAAATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagcagcacatctgcaaaactttcatgatactgtatattctttgtgatcgcagGTTGAGTTTATACCAAAATTCAGTGTAAGCGGGATATGGCAGAGATGGCGAGAATCATATCCCAACGATGCGAGTAAAAGTACAGAGGCCATTACAGTAT
                                       ttctttgt  CT-rich tract
                                   tatattcttt  TA-rich tract