Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatgtttcctgaaatccattaaaatatttgatggataaccaaacttattaacctttagatttaacatgtagtccatacctatccattttgattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAG

Basic information

species Zea mays
transcript GRMZM2G381933_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G381933_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g15490.2 (Oryza sativa), 3'ss of exon 7
tcatgtt----tcctga-aatccattaaaatatttgatggataaccaaacttattaacctttagatttaacatgtagtccatacctatccattttgattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAG
|  ||||    | |||| | ||   |  | | |||  ||  |||   |  | ||| ||  ||   ||  |||  || |  ||||   | | |   | |  |||||||| || |||  |||||||||  |||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||| 
tggtgttgccgtgctgatactctggtttattgttttttgtgtaaatga-ttcattgacagttgttttatacaatta-ttgatacacgtgcgt---ggtatttcagGTTCGGCACAGTTGAGGATAAGCTAGGTGCAGGCTTGTGCAAGAAGCTTCATGCAATTGGCTGGCGAGTTTCTCATGTAGCAGTTGTTTCCAATGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33285805|gb|CF075600.1|CF075600
EST:     CGGCATCAATCATTGTAGTCGGTGATGAAATTTT                         GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
genomic: CGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
EST: gi|33285569|gb|CF075364.1|CF075364
EST:     CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTT                         GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
genomic: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
EST: gi|33770862|gb|CF273156.1|CF273156
EST:     CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTT                         GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
genomic: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
EST: gi|78087486|gb|DV515879.1|DV515879
EST:     CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTT                         GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
genomic: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
EST: gi|67023704|gb|CO452453.1|CO452453
EST:     CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTT                         GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
genomic: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattaacctttagatttaacatgtagtccatacctatccattttgattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAG
                                               ttcttc  CT-rich tract
         tttagatttaacat  TA-rich tract