1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tcatgtttcctgaaatccattaaaatatttgatggataaccaaacttattaacctttagatttaacatgtagtccatacctatccattttgattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAG
species | Zea mays |
transcript | GRMZM2G381933_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGGCATCAATCATTGTAGTCGGTGATGAAATTTT GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCAEST: gi|33285569|gb|CF075364.1|CF075364
genomic: CGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
EST: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTT GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCAEST: gi|33770862|gb|CF273156.1|CF273156
genomic: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
EST: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTT GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCAEST: gi|78087486|gb|DV515879.1|DV515879
genomic: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
EST: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTT GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCAEST: gi|67023704|gb|CO452453.1|CO452453
genomic: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
EST: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTT GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
genomic: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
ttattaacctttagatttaacatgtagtccatacctatccattttgattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAG
ttcttc CT-rich tract
tttagatttaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgtttcctgaaatccattaaaatatttgatggataaccaaacttattaacctttagatttaacatgtagtccatacctatccattttgattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAG
- atgtttc
- - - - - - - - - - - - - -tttgatg
- - - - - - - - - - - - - - - - - - -aaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatacc