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gtatctattgtgttcagtgaaaagcttttcctagttcagcctgatttggtgtcattttatgactgcgtggatcatgtgttcagGACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGTTGAGCTTTGCACG
species | Zea mays |
transcript | GRMZM2G179308_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGTTATATTGTGTCGACGAGGCATTATCGGGCTCCAGAAGTTATACTGG AACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGEST: gi|45568628|gb|CK986157.1|CK986157
genomic: GAGTTATGTTGTGTCGACGAGGCATTATCGGGCTCCAGAAGTTATACTGGgtatctattg ... atgtgttcagGACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTG
EST: GAGTTATGTTGTGTCGACGAGGCATTATCGAGCTCCAGAAGTTATACTGG GACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGEST: gi|76015336|gb|DT942506.1|DT942506
genomic: GAGTTATGTTGTGTCGACGAGGCATTATCGGGCTCCAGAAGTTATACTGGgtatctattg ... atgtgttcagGACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTG
EST: GAGTTATGTTGTGTCGACGAGGCATTATCGGGCTCCAGAAGTTATACTGG GACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGEST: gi|71756384|gb|DR954321.1|DR954321
genomic: GAGTTATGTTGTGTCGACGAGGCATTATCGGGCTCCAGAAGTTATACTGGgtatctattg ... atgtgttcagGACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTG
EST: GAGTTATGTTGTGTCGACGAGGCATTATCGGGCTCCAGAAGTTATACTGG GACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGEST: gi|71434755|gb|DR815805.1|DR815805
genomic: GAGTTATGTTGTGTCGACGAGGCATTATCGGGCTCCAGAAGTTATACTGGgtatctattg ... atgtgttcagGACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTG
EST: GAGTTATGTTGTGTCGACGAGGCATTATCGGGCTCCAGAAGTTATACTGG GACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGEST: gi|60357877|gb|DN224850.1|DN224850
genomic: GAGTTATGTTGTGTCGACGAGGCATTATCGGGCTCCAGAAGTTATACTGGgtatctattg ... atgtgttcagGACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTG
EST: GAGTTATGTTGTGTCGACGAGGCATTATCGGGCTCCAGAAGTTATACTGG GACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGEST: gi|60347445|gb|DN214418.1|DN214418
genomic: GAGTTATGTTGTGTCGACGAGGCATTATCGGGCTCCAGAAGTTATACTGGgtatctattg ... atgtgttcagGACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTG
EST: GAGTTATGTTGTGTCGACGAGGCATTATCGGGCTCCAGAAGTTATACTGG GACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTG
genomic: GAGTTATGTTGTGTCGACGAGGCATTATCGGGCTCCAGAAGTTATACTGGgtatctattg ... atgtgttcagGACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTG
tcctagttcagcctgatttggtgtcattttatgactgcgtggatcatgtgttcagGACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGTTGAGCTTTGCACG
gcctgat putative branch site (score: 4)
tcattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctattgtgttcagtgaaaagcttttcctagttcagcctgatttggtgtcattttatgactgcgtggatcatgtgttcagGACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGTTGAGCTTTGCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT