1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtattttcctaatttctgtctatgaccgaccatacaattattatttttttggtttccatacggatttgtgcatcaagtaatgccaagctgattttccagGAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACATTGTATATCTG
species | Zea mays |
transcript | GRMZM2G157310_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCT GAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACATEST: gi|71774185|gb|DR972065.1|DR972065
genomic: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCTgttagtaact ... gattttccagGAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACAT
EST: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCT GAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACATEST: gi|211203591|gb|FL469055.1|FL469055
genomic: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCTgttagtaact ... gattttccagGAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACAT
EST: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCT GAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACATEST: gi|91877197|gb|EB407154.1|EB407154
genomic: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCTgttagtaact ... gattttccagGAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACAT
EST: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCT GAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACATEST: gi|71763675|gb|DR961612.1|DR961612
genomic: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCTgttagtaact ... gattttccagGAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACAT
EST: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCT GAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACATEST: gi|149009394|gb|EE153935.2|EE153935
genomic: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCTgttagtaact ... gattttccagGAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACAT
EST: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCT GAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACATEST: gi|31354764|gb|CD439121.1|CD439121
genomic: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCTgttagtaact ... gattttccagGAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACAT
EST: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCT GAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACATEST: gi|211348037|gb|FL481321.1|FL481321
genomic: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCTgttagtaact ... gattttccagGAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACAT
EST: TAAACTATGACAACAGGATCGCTGTTGGATTCCT GAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACATEST: gi|78092208|gb|DV520582.1|DV520582
genomic: TAAACTATGACAACAGGATCGCTGTTGGATTCCTgttagtaact ... gattttccagGAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACAT
EST: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCT GAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACATEST: gi|37400710|gb|CF637712.1|CF637712
genomic: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCTgttagtaact ... gattttccagGAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACAT
EST: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCT GAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACATEST: gi|88749393|gb|DY533534.1|DY533534
genomic: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCTgttagtaact ... gattttccagGAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACAT
EST: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCT GAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACAT
genomic: GGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCTgttagtaact ... gattttccagGAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACAT
ttttttggtttccatacggatttgtgcatcaagtaatgccaagctgattttccagGAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACATTGTATATCTG
agctgat putative branch site (score: 16)
ttttcc CT-rich tract
aagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtattttcctaatttctgtctatgaccgaccatacaattattatttttttggtttccatacggatttgtgcatcaagtaatgccaagctgattttccagGAACGCCAACATCGAGAAATCTTTGAAGGATTACTCTAGCGCGTTTGACATTGTATATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
tgtattt
- - - - - - - - - - - - - - - -catacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccaagc