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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctccgaatcaacttatatttgggattggcggggtgggattacatcgatttaacctcactgttctaattatgaattaatagcttatcaattattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG

Basic information

species Zea mays
transcript GRMZM2G143462_T04
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143462_T06 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g08300.2 (Oryza sativa), 3'ss of exon 8
--gctccgaatcaacttatatttgggat-tggcggggtgggattacatcgatttaacctcactgttctaattatgaattaatagcttatcaattattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
  |     ||  | | |   ||||| ||    |      | || || | |  ||      | ||||  | |     |    || |||    | ||||||||||||||| ||  || |||||||||| ||||| || |||||||| ||||||
tcgagaaaaaaaagcatcattttggtatacctccattcagtataacgttgcgttgtttgaattgttgaagtataacaccgctatcttc---actattttgcagTTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19351385|gb|BM895917.1|BM895917
EST:     GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG                         TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: gi|71764240|gb|DR962177.1|DR962177
EST:     GAGGTGGTGCTGGTGGTGGACCACTTGATTTT-TTAGAAACAATCCACAG                         TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: gi|9731839|gb|BE510591.1|BE510591
EST:     GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG                         TTTCAAGCAGTTCGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: gi|71771538|gb|DR969475.1|DR969475
EST:     GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG                         TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatttaacctcactgttctaattatgaattaatagcttatcaattattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
                                            ttatttt  CT-rich tract
                ttctaattatgaatta  TA-rich tract