1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cattgaagtctggatggatgaaggcacacaaagaaaattccaatgtaattttgaaattttgatcatattacatgtcaaatgaatttgttacttcttgcagAAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGAATGACACCACAGAAGCTCCCT
species | Zea mays |
transcript | GRMZM2G133757_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTGTAAAGGTCCCCTTTCAATGGCCCAGCGAGAG AAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGAEST: gi|74237045|gb|DT644959.1|DT644959
genomic: CTTGTAAAGGTCCCCTTTCAATGGCCCAGCGAGAGgttctttctg ... cttcttgcagAAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGA
EST: TTTGAACAAGCTTGTAAAGGTCCCCTTTCAATGGCCCAGCGAGAG AAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGAEST: gi|76289048|gb|DV028616.1|DV028616
genomic: TTTGAACAAGCTTGTAAAGGTCCCCTTTCAATGGCCCAGCGAGAGgttctttctg ... cttcttgcagAAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGA
EST: ATTGGTTTGAACAAGCTTGTAAAGGTCCCCTTTCAATGGCCCAGCGAGAG AAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGAEST: gi|60339490|gb|DN206463.1|DN206463
genomic: ATTTGTTTGAACAAGCTTGTAAAGGTCCCCTTTCAATGGCCCAGCGAGAGgttctttctg ... cttcttgcagAAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGA
EST: ATTTGTTTGAACAAGCTTGTAAAGGTCCCCTTTCAATGGCCCAGCGAGAG AAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGAEST: gi|71443366|gb|DR824416.1|DR824416
genomic: ATTTGTTTGAACAAGCTTGTAAAGGTCCCCTTTCAATGGCCCAGCGAGAGgttctttctg ... cttcttgcagAAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGA
EST: TTTGTTTGAACAAGCTGGTAAAGGTCCCCTTTCAATGGCCCAGCGAGAG AAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGAEST: gi|60401226|gb|DN234033.1|DN234033
genomic: TTTGTTTGAACAAGCTTGTAAAGGTCCCCTTTCAATGGCCCAGCGAGAGgttctttctg ... cttcttgcagAAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGA
EST: ATTTGTTTGAACAAGCTTGTAAAGGTCCCCTTTCAATGGCCCAGCGAGAG AAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGA
genomic: ATTTGTTTGAACAAGCTTGTAAAGGTCCCCTTTCAATGGCCCAGCGAGAGgttctttctg ... cttcttgcagAAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGA
taattttgaaattttgatcatattacatgtcaaatgaatttgttacttcttgcagAAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGAATGACACCACAGAAGCTCCCT
ttttgat putative branch site (score: 4)
ttacttctt putative PPT
aaattttgatcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattgaagtctggatggatgaaggcacacaaagaaaattccaatgtaattttgaaattttgatcatattacatgtcaaatgaatttgttacttcttgcagAAAATTATCGAATATCTGAGGAAGGATGGGAAGCTACTTAATCATTGTGGAATGACACCACAGAAGCTCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC