Sequence
atgc intronic sequence ATGC exonic sequence...tacttgagcagttctggtgttatgttaacttttgataaaacatgggcttgaagttgtagttttactaatattgcactggcaaatctttttaattttccagCTATGTACCTTGCAAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATATATGGCTTTGAGGGGGAAGTGAGGTCAAAGCTGGGTGAGAAGTTTGTTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G126435_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g11550.1 (Oryza sativa), 3'ss of exon 8
-----------------------------------------------------tacttgagcagttctggtgttatgtta-----acttttgataaa-acatgggcttgaagttgtagttttactaatattgcactggcaaatctttttaattttccagCTATGTACCTTGCAAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATATATGGCTTTGAGGGGGAAGTGAGGTCAAAGCTGGGTGAGAAGTTTGTTGA
||||| | || ||| | ||| ||| |||| | ||| | || | || | ||||| | || ||| || | | | || || ||| ||||| ||||||||||||||||||||| ||||| |||||||||||||| || |||||||| |||||||| ||||||||||| ||| |||| || ||| ||||
gtaactgctagttttgatacttttcatgaactagatattagtatgcaatctgttactttactagctcttttattacattattctaacttataatagatgtatcgatttta-gttgttcatgtaataaggtttcctttatacataccttgaatgatccagGTATGTACCTTGCAAGAGGAAACCATGAGAGCAAGAGCATGAATAAGATATATGGTTTTGAGGGAGAAGTGAGGTCGAAGTTGGGAGAAGCATTTATTGA
upper sequence: GRMZM2G126435_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA18G12440.1 (Glycine max), 3'ss of exon 8
tacttgagcagttctggtgttatgttaa-cttttgataaaacatgggcttgaagttgtagttttactaatattgca--ctggcaaatcttttta-attttccagCTATGTACCTTGCAAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATATATGGCTTTGAGGGGGAAGTGAGGTCAAAGCTGGGTGAGAAGTTTGTTGA-
| | | | |||| | || ||| | | ||| ||| | || || | |||| | || | | ||| |||| || || | || |||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||| | || ||| || ||| | ||||| ||
----tcttctttcttcactttatctggttctcttgtttgagagaatgctatttgtttttgtcttggca-cattgtaacttgttttgttgccatgtgattttcagcCATATATTTAGCCAGAGGAAATCATGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCGAAGTTGAATGAAACATTTGTCGAA
upper sequence: GRMZM2G126435_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA08G42380.1 (Glycine max), 3'ss of exon 8
tacttgagcagttctggtgttatgttaacttttgataaaacatgggcttgaagttgtagttttactaatattgcactggcaaatctttttaat------tttccagCTATGTACCTTGCAAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATATATGGCTTTGAGGGGGAAGTGAGGTCAAAGCTGGGTGAGAAGTTTGTTGA
|| | | || |||| | || | | | | | | | || || | ||| ||| | | || || || ||| |||| || || | || |||||||||||||| || |||||||||||||| |||||||| |||||||| || ||| | || ||| || ||| | ||||| ||
---ttcttctttcctcactttatcc--agttcggttgtttgagagaatgttattcgtttttctcctagtatattg-taacttattttgttgccatatgattttcagCCATATATTTAGCCAGAGGAAATCATGAGAGTAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCGAAGTTGAATGAAACATTTGTCGA
upper sequence: GRMZM2G126435_T02 (Zea mays), 3'ss of exon 7
lower sequence: AT2G42810.1 (Arabidopsis thaliana), 3'ss of exon 8
----------------------------------------------------tacttgagcagtt-ctggtg----ttatgttaacttttgataaaacatgggcttgaa-gttgtagttttactaatattgcactggcaaatctttttaattttccagCTATGTACCTTGCAAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATATATGGCTTTGAGGGGGAAGTGAGGTCAAAGCTGGGTGAGAAGTTTGTTGA
| ||| || | |||| ||| ||| | | | ||||| || || ||| ||||| | || | | | | || | | |||| || || || || |||||||| |||||||||||||||||||||||||| ||||| |||||||| || || |||| ||| || |||| || || || ||
gtaagttctctaaaactttgttgtaataattctttgatgttcatgttttaattgcttttgctatcactggcaaggattaaattatttactattgtctgatggggttaaaagtttccattttaattgtaaatcgccatttacacacctttgtactgcagCCATATATCTAGCCAGAGGAAACCATGAAAGCAAGAGCATGAACAAAATTTATGGTTTTGAGGGTGAGGTTCGGTCCAAGTTGAGTGAAAAATTCGTGGA
upper sequence: GRMZM2G126435_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv12s0142g00720.t01 (Vitis vinifera), 3'ss of exon 2
--tacttgagcagttctggtgttatgttaacttttgataaaacatgggcttgaagttgtagttttac-taatattgcactggcaaatctttttaattttccagCTATGTACCTTGCAAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATATATGGCTTTGAGGGGGAAGTGAGGTCAAAGCTGGGTGAGAAGTTTGTTGA
| || | | || | ||| | || | ||| | | | | || || | | | ||| || || | | | || | | ||||||| || || | ||||||||||| || ||||||||||||||||| |||||||| ||||| ||||| || || || ||| || |||| | ||||| ||
tttgtttcctcttcctttgtttcatgct--ctctaagtaacaaaatcacaactaattttattctcatgtaacatcttgttgactggt-tcaaaaaatcttcagCTATATATCTCTCTAGAGGAAATCACGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAAGGGGAGGTCAGATCCAAGTTGAGTGAAACATTTGTGGA
upper sequence: GRMZM2G126435_T02 (Zea mays), 3'ss of exon 7
lower sequence: PP1S80_144V6.1 (Physcomitrella patens), 3'ss of exon 7
tacttgagcagttctggtgt-tatgttaacttttgataaaacatgggcttgaagttgtagttttactaatattgcactggcaa-atctttttaattttccagCTA----TGTACCTTGCAAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATATATGGCTTTGAGGGGGAAGTGAGGTCAAAGCTGGGTGAGAAGTTTGTTGA
| |||||| || | || | | | || | | | | || | | ||| | | || | | || || ||| || || |||||||| | ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| || | | ||| | ||||| | | |
-----tatatgttctgatgagcttattcagtgtatatcaggagactgatcacactta-actcactctacttcctctctaacctcgttttatttattgtctgaatagGGCTGTACCTTTCTAGAGGTAATCATGAAAGCAAGAGCATGAACAAAATATATGGTTTTGAAGGGGAGGTTAACGCGAAGTTCAATGAGACAATGAATAA
upper sequence: GRMZM2G126435_T02 (Zea mays), 3'ss of exon 7
lower sequence: PP1S87_139V6.1 (Physcomitrella patens), 3'ss of exon 8
tacttgagcagttctggtgttatgttaacttttgataaaacatgggcttgaagt-tgtagttttactaatattgcac-tggcaaatcttttta----attttccagCTATGTACCTTGCAAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATATATGGCTTTGAGGGGGAAGTGAGGTCAAAGCTGGGTGAGAAGTTTGTTGA-
|||| || || | | ||||| |||| || | | ||| ||| ||| | ||| | | || | ||| | ||| || |||||||| | ||||| ||||||||||| ||||||||||||||||||||||| ||||| || ||||| | | ||| | ||||| | || ||
-----agtaagttgtgatgagtttgttgtttttg-taaatcaggagactgagtcctgtcaatttttttataccctgcctaacatgtttttgtgtgtgattgaatagGACTGTACCTTTCCAGAGGTAATCATGAAAGTAAGAGCATGAACAAAATATATGGTTTTGAAGGAGAAGTCAACGCGAAGTTCAATGAGAC-TATGACGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|61118887|gb|DN559848.1|DN559848EST: CGTTGAAGTCATACTCACCCTTTTTGCTTTCAAGTGCCTCTACCCAAAAG CTATGTACCTTGCAAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATAT
genomic: CGTTGAAGTCATACTCACCCTTTTTGCTTTCAAGTGCCTCTACCCAAAAGgtattctcac ... aattttccagCTATGTACCTTGCAAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcttgaagttgtagttttactaatattgcactggcaaatctttttaattttccagCTATGTACCTTGCAAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATATATGGCTTTGAGGGGGAAGTGAGGTCAAAGCTGGGTGAGAAGTTTGTTGA
tctttttaattttcc CT-rich tract
aaatctttttaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacttgagcagttctggtgttatgttaacttttgataaaacatgggcttgaagttgtagttttactaatattgcactggcaaatctttttaattttccagCTATGTACCTTGCAAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATATATGGCTTTGAGGGGGAAGTGAGGTCAAAGCTGGGTGAGAAGTTTGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT