1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttatgtttccggacacatatacataatgccacgtgtggccgcgttcgtctgtgcgtctgacgtgcgtgcgtgcatcgtttccagGCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCTGATCGGGCTCGAGGTCGAGCACGTCGACGACCGGAGCATGTGCTGCGCG
species | Zea mays |
transcript | GRMZM2G119265_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAATCTACGCCATCTCCAAGGACTTCGCCGCCTACATCTCCATCAACCA GCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCTEST: gi|148946206|gb|EC891501.2|EC891501
genomic: CAAATCTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCAgttatgtttc ... tcgtttccagGCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCT
EST: CAAATTTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCA GCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCTEST: gi|148982796|gb|EE028625.2|EE028625
genomic: CAAATCTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCAgttatgtttc ... tcgtttccagGCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCT
EST: CAAATCTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCA GCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCTEST: gi|94472474|gb|EB701432.1|EB701432
genomic: CAAATCTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCAgttatgtttc ... tcgtttccagGCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCT
EST: CAAATCTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCA GCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCTEST: gi|149105464|gb|EE290981.2|EE290981
genomic: CAAATCTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCAgttatgtttc ... tcgtttccagGCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCT
EST: CAAATTTACGCCATCTCCAAGGACCTCGCCGCCTACATTTCCATCAACCA GCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCTEST: gi|149009309|gb|EE153896.2|EE153896
genomic: CAAATCTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCAgttatgtttc ... tcgtttccagGCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCT
EST: CAAATTTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCA GCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCTEST: gi|211026936|gb|FL261353.1|FL261353
genomic: CAAATCTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCAgttatgtttc ... tcgtttccagGCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCT
EST: CAAATCTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCA GCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCTEST: gi|101401735|gb|EB822520.1|EB822520
genomic: CAAATCTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCAgttatgtttc ... tcgtttccagGCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCT
EST: CAAATCTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCA GCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCTEST: gi|148930010|gb|EE285878.2|EE285878
genomic: CAAATCTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCAgttatgtttc ... tcgtttccagGCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCT
EST: CAAATTTACGCCATCTCCAAGGACCTCGCCGCCTACATTTCCATCAACCA GCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCT
genomic: CAAATCTACGCCATCTCCAAGGACCTCGCCGCCTACATCTCCATCAACCAgttatgtttc ... tcgtttccagGCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCT
cacgtgtggccgcgttcgtctgtgcgtctgacgtgcgtgcgtgcatcgtttccagGCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCTGATCGGGCTCGAGGTCGAGCACGTCGACGACCGGAGCATGTGCTGCGCG
gtctgac putative branch site (score: 715)
tcgtttcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgtttccggacacatatacataatgccacgtgtggccgcgttcgtctgtgcgtctgacgtgcgtgcgtgcatcgtttccagGCCGATCCTGCACAGGTTCGCGAACGAGGACGTCTCGCTGGGGGCGTGGCTGATCGGGCTCGAGGTCGAGCACGTCGACGACCGGAGCATGTGCTGCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC