1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...cgtgtatatgaattagttgtgatttctgtatgttatttagtcttacgattcttaccaagtcttaccagtggattaaacattttcttatacttgttttcagCTTGGTGAAGAACTTTGGTTCACAATAGGGGGGCAACATATTCCTTTTGGTGCATCACCACAG
species | Zea mays |
transcript | GRMZM2G116434_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TACCTGCACTGCCTGCAGGCAGCCTGTATATGGAGGAGGTGCACGCGAAG CTTGGTGAAGAACTTTGGTTCACAATAGGGGGGCAACATATTCCTTTTGGTEST: gi|149105604|gb|EE291147.2|EE291147
genomic: TACCTGCACTGCCTGCAGGCAGCCTGTATATGGAGGAGGTGCACGCGAAGgtatgctatg ... ttgttttcagCTTGGTGAAGAACTTTGGTTCACAATAGGGGGGCAACATATTCCTTTTGGT
EST: TACCTGCACTGCCTGCAGGCAGCCTGTATATGGAGGAGGTGCACGCGAAG CTTGGTGAAGAACTTTGGTTTCACA-TAGGGGGGCAACATATTCCTTTTGGEST: gi|67015496|gb|CO444245.1|CO444245
genomic: TACCTGCACTGCCTGCAGGCAGCCTGTATATGGAGGAGGTGCACGCGAAGgtatgctatg ... ttgttttcagCTTGGTGAAGAACTTTGGTT-CACAATAGGGGGGCAACATATTCCTTTTGG
EST: TACCTGCACTGCCTGCAGGCAGCCTGTATATGGAGGAGGTGCACGCGAAG CTTGGTGAAGAACTTTGGTTCACAATAGGGGGGCAACATATTCCTTTTGGTEST: gi|101393044|gb|EB818453.1|EB818453
genomic: TACCTGCACTGCCTGCAGGCAGCCTGTATATGGAGGAGGTGCACGCGAAGgtatgctatg ... ttgttttcagCTTGGTGAAGAACTTTGGTTCACAATAGGGGGGCAACATATTCCTTTTGGT
EST: TACCTGCACTGCCTGCAGGCAGCCTGTATATGGAGGAGGTGCACGCGAAG CTTGGTGAAGAACTTTGGTTCACAATAGGGGGGCAACATATTCCTTTTGGTEST: gi|78106231|gb|DV524649.1|DV524649
genomic: TACCTGCACTGCCTGCAGGCAGCCTGTATATGGAGGAGGTGCACGCGAAGgtatgctatg ... ttgttttcagCTTGGTGAAGAACTTTGGTTCACAATAGGGGGGCAACATATTCCTTTTGGT
EST: TACCTGCACTGCCTGCAGGCAGCCTGTATATGGAGGAGGTGCACGCGAAG CTTGGTGAAGAACTTTGGTTCACAATAGGGGGGCAACATATTCCTTTTGGT
genomic: TACCTGCACTGCCTGCAGGCAGCCTGTATATGGAGGAGGTGCACGCGAAGgtatgctatg ... ttgttttcagCTTGGTGAAGAACTTTGGTTCACAATAGGGGGGCAACATATTCCTTTTGGT
cgattcttaccaagtcttaccagtggattaaacattttcttatacttgttttcagCTTGGTGAAGAACTTTGGTTCACAATAGGGGGGCAACATATTCCTTTTGGTGCATCACCACAG
cttgttttc CT-rich tract
attaaacattttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtgtatatgaattagttgtgatttctgtatgttatttagtcttacgattcttaccaagtcttaccagtggattaaacattttcttatacttgttttcagCTTGGTGAAGAACTTTGGTTCACAATAGGGGGGCAACATATTCCTTTTGGTGCATCACCACAG
- - - - - - - - -tgtgatt
- - - - - - - - - - - - -ctgtatg