1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tttcctgctattgtgaattggtaaatcactggcatcttttcctcaaaaaaggaaactgctgcaaagcccaacacctgattcttcttttttctcctagcagTTACCTGCAGGGAACAAAATGATTGGTCCATCGATATCCTTTTCACTTTCTGATATAAAAAAAGAATACAAG
species | Zea mays |
transcript | GRMZM2G111510_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCATGGGGGAGTTTGAAGAAGGTGCTGAAAAGAACCTGGAAGAAGCAAAG TTACCTGCAGGGAACAAAATGATTGGTCCATCGATATCCTTTTCACTTTCTEST: gi|33095039|gb|CF055033.1|CF055033
genomic: GCATGGGGGAGTTTGAAGAAGGTGCTGAAAAGAACCTGGAAGAAGCAAAGgtgatgtgtg ... ctcctagcagTTACCTGCAGGGAACAAAATGATTGGTCCATCGATATCCTTTTCACTTTCT
EST: GCATGGGGGAGTTTGAAGAAGGTGCTGAAAAGAACCTGGAAGAAGCAAAG TTACCTGCAGGGAACAAAATGATTGGTCCATCGATATCCTTTTCACTTTCTEST: gi|28984330|gb|BQ538995.2|BQ538995
genomic: GCATGGGGGAGTTTGAAGAAGGTGCTGAAAAGAACCTGGAAGAAGCAAAGgtgatgtgtg ... ctcctagcagTTACCTGCAGGGAACAAAATGATTGGTCCATCGATATCCTTTTCACTTTCT
EST: GCATGGGGGAGTTTGAAGAAGGTGCTGAAAAGAACCTGGAAGAAGCAAAG TTACCTGCAGGGAACAAAATGATTGGTCCATCGATATCCTTTTCACTTTCTEST: gi|32932991|gb|CF037803.1|CF037803
genomic: GCATGGGGGAGTTTGAAGAAGGTGCTGAAAAGAACCTGGAAGAAGCAAAGgtgatgtgtg ... ctcctagcagTTACCTGCAGGGAACAAAATGATTGGTCCATCGATATCCTTTTCACTTTCT
EST: GCATGGGGGAGTTTGAAGAAGGTGCTGAAAAGAACCTGGAAGAAGCAAAG TTACCTGCAGGGAACAAAATGATTGGTCCATCGATATCCTTTTCACTTTCTEST: gi|166577478|gb|EG062415.1|EG062415
genomic: GCATGGGGGAGTTTGAAGAAGGTGCTGAAAAGAACCTGGAAGAAGCAAAGgtgatgtgtg ... ctcctagcagTTACCTGCAGGGAACAAAATGATTGGTCCATCGATATCCTTTTCACTTTCT
EST: CATGGGGGGAGTTTGAAGAAGGTGCTGAAAAGAACCTGGAAGAAGCAAAG TTACCTGCAGGG
genomic: CAT-GGGGGAGTTTGAAGAAGGTGCTGAAAAGAACCTGGAAGAAGCAAAGgtgatgtgtg ... ctcctagcagTTACCTGCAGGG
aaaaaggaaactgctgcaaagcccaacacctgattcttcttttttctcctagcagTTACCTGCAGGGAACAAAATGATTGGTCCATCGATATCCTTTTCACTTTCTGATATAAAAAAAGAATACAAG
acctgat putative branch site (score: 117)
cacctgattcttcttt CT-rich tract
ttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcctgctattgtgaattggtaaatcactggcatcttttcctcaaaaaaggaaactgctgcaaagcccaacacctgattcttcttttttctcctagcagTTACCTGCAGGGAACAAAATGATTGGTCCATCGATATCCTTTTCACTTTCTGATATAAAAAAAGAATACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- -cctgcta
- - - - - - -tgaattg
- - - - - - - - - - - - - - - - - - - - - -caaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccaaca