1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttttcaggtgatatccatgaagccaatagccacacacaacgactgtgttatctgtacgtacttatgcaacctcaatcgcattgattaatgagtgcgtgtgttcgtcctgggcgaacaaagGTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCCTGACGAGCACGGTCGGTCTGGATGGATATGAGATGCTCCGGTCCGATGC
species | Zea mays |
transcript | GRMZM2G102161_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGGGACTCCTTCAGTACCATGGCAATGATCCTTCCCTGCAGACACG GTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCCEST: gi|18178380|gb|BM379590.1|BM379590
genomic: TTCCAGGGACTCCTTCAGCACCATGGCAATGATCCTTCCCTGCAGACACGgtaagttttc ... gcgaacaaagGTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCC
EST: TTCCAGGGACTCCTTCAGCACCATGGCAATGATCCTTCCCTGCAGACACG GTACCATCAGCAGGCCTACATGGACCAGTTGAACGAGGACATGGCGGACCCEST: gi|67011315|gb|CO440064.1|CO440064
genomic: TTCCAGGGACTCCTTCAGCACCATGGCAATGATCCTTCCCTGCAGACACGgtaagttttc ... gcgaacaaagGTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCC
EST: TTCCAGGGACTCCTTCAGTACCATGGCAATGATCCTTCCCTGCAGACACG GTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCCEST: gi|211408739|gb|FL193402.1|FL193402
genomic: TTCCAGGGACTCCTTCAGCACCATGGCAATGATCCTTCCCTGCAGACACGgtaagttttc ... gcgaacaaagGTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCC
EST: TTCCAGGGACTCCTTCAGCACCATGGCAATGATCCTTCCCTGCAGACACG GTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCCEST: gi|32810400|gb|CD962634.1|CD962634
genomic: TTCCAGGGACTCCTTCAGCACCATGGCAATGATCCTTCCCTGCAGACACGgtaagttttc ... gcgaacaaagGTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCC
EST: TTCCAGGGACTCCTTCAGTACCATGGCAATGATCCTTCCCTGCAGACGCG GTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCCEST: gi|211408738|gb|FL193401.1|FL193401
genomic: TTCCAGGGACTCCTTCAGCACCATGGCAATGATCCTTCCCTGCAGACACGgtaagttttc ... gcgaacaaagGTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCC
EST: TTCCAGGGACTCCTTCAGCACCATGGCAATGATCCTTCCCTGCAGACACG GTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCCEST: gi|16917809|gb|BM073443.1|BM073443
genomic: TTCCAGGGACTCCTTCAGCACCATGGCAATGATCCTTCCCTGCAGACACGgtaagttttc ... gcgaacaaagGTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCC
EST: TTCCAGGGACTCCTTCAGCACCATGGCAATGATCCTTCCCTGCAGACACG GTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCCEST: gi|211408737|gb|FL193400.1|FL193400
genomic: TTCCAGGGACTCCTTCAGCACCATGGCAATGATCCTTCCCTGCAGACACGgtaagttttc ... gcgaacaaagGTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCC
EST: TTCCAGGGACTCCTTCAGTACCATGGCAATGATCCTTCCCTGCAGACACG GTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCCEST: gi|32824768|gb|CD964490.1|CD964490
genomic: TTCCAGGGACTCCTTCAGCACCATGGCAATGATCCTTCCCTGCAGACACGgtaagttttc ... gcgaacaaagGTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCC
EST: TTCCAGGGACTCCTTCAGTACCATGGCAATGATCCTTCCCTGCAGACACG GTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCCEST: gi|32866292|gb|CF005974.1|CF005974
genomic: TTCCAGGGACTCCTTCAGCACCATGGCAATGATCCTTCCCTGCAGACACGgtaagttttc ... gcgaacaaagGTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCC
EST: TTCCAGGGACTCCTTCAGTACCATGGCAATGATCCTTCCCTGCAGACACG GTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCC
genomic: TTCCAGGGACTCCTTCAGCACCATGGCAATGATCCTTCCCTGCAGACACGgtaagttttc ... gcgaacaaagGTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCC
gcaacctcaatcgcattgattaatgagtgcgtgtgttcgtcctgggcgaacaaagGTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCCTGACGAGCACGGTCGGTCTGGATGGATATGAGATGCTCCGGTCCGATGC
gattaat putative branch site (score: 52)
attgattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttcaggtgatatccatgaagccaatagccacacacaacgactgtgttatctgtacgtacttatgcaacctcaatcgcattgattaatgagtgcgtgtgttcgtcctgggcgaacaaagGTACCATCAGCAGGCCTACATGGACCAGCTGAACGAGGACATGGCGGACCCTGACGAGCACGGTCGGTCTGGATGGATATGAGATGCTCCGGTCCGATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG